View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_18 (Length: 390)
Name: NF19924_low_18
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 43359936 - 43360285
Alignment:
| Q |
18 |
gaatgattgattgactcatgcgccgctatagtactctccttctcttctcctactaaaaatgtatctattt-gtaaatatcataaataatggattccactt |
116 |
Q |
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| T |
43359936 |
gaatgattgattgactcatgcgccgctatagtactctccttctc-----ctactaaaaatgtatctattttgtaaatatcataaataatggattccactt |
43360030 |
T |
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| Q |
117 |
ttgcacaatataggagaatagtgtctttaatttgttccttggaagaaaaatagggttttggcttggaactgttcaagtgcaataaaaaaggttctctcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360031 |
ttgcacaatataggagaatagtgtctttaatttgttccttggaagaaaaatagggttttggcttggaactgttcaagtgcaataaaaaaggttctctcaa |
43360130 |
T |
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| Q |
217 |
ttaattcttgaattgatgttaatagtaagtaataataaaggcaccgactgtactatattataagttggaagttggagctgagaggcctaagaaagcaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360131 |
ttaattcttgaattgatgttaatagtaagtaataataaaggcaccgactgtactatattataagttggaagttggagctgagaggcctaagaaagcaatg |
43360230 |
T |
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| Q |
317 |
cactgagttcatgctttgggggagaggagatgaatgaattagtccaatacagtatg |
372 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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| T |
43360231 |
cactgagttcatgcttt-gggtagaggagatgaatgaattagtccaatacattatg |
43360285 |
T |
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