View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_19 (Length: 384)
Name: NF19924_low_19
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 52809432 - 52809799
Alignment:
| Q |
1 |
aggttctctggaatccatcctttgtcattccctcttgcagtgattttcatgaccacgtgaacaagcatgctactcacatagtttccaagagaaattgaag |
100 |
Q |
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| T |
52809432 |
aggttctctggaatccaacctttgtcattccctcttgcagtgattttcatgaccacgtgaacaagcatgctactcacatagtttccaagagaaattgaag |
52809531 |
T |
|
| Q |
101 |
ccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaattgacccacatacatgaaaacctctgaagcaccaat |
200 |
Q |
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| T |
52809532 |
ccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaattgacccacatacatgaaaacctctgaagcaccaat |
52809631 |
T |
|
| Q |
201 |
cagaacatactgtggaatttgatagaatatactcattgaacttcttttctgcccaggaattatatttctcagccttgcaatctctgtcatacctgatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
52809632 |
cagaacatactgtggaatttgatagaatatactcattgaacttcttttctgcccaggaattatatttctcagccttaccatctctgtcatacctgatgca |
52809731 |
T |
|
| Q |
301 |
accattgacaacattgcaattattaacccaattcccattctttcaagttcactaattccccttgtatt |
368 |
Q |
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| T |
52809732 |
accattgacaacattgcaattattaacccaattcccattctttcaagttcactaattccccttgtatt |
52809799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 397928 - 397759
Alignment:
| Q |
66 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
165 |
Q |
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| T |
397928 |
catgctgctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
397829 |
T |
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| Q |
166 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
235 |
Q |
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|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
397828 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactca |
397759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 3802856 - 3803025
Alignment:
| Q |
66 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
165 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| |
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| T |
3802856 |
catgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
3802955 |
T |
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| Q |
166 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
235 |
Q |
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| T |
3802956 |
tgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaatttgatagaatatactca |
3803025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 2745916 - 2745785
Alignment:
| Q |
60 |
aacaagcatgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaac |
159 |
Q |
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|||||||| |||||| ||||||||||| | || ||||||| ||||||||||| ||| ||||| ||||| | |||||| ||||| || ||| || ||| |
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| T |
2745916 |
aacaagcaagctactaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaac |
2745817 |
T |
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| Q |
160 |
tccaattgacccacatacatgaaaacctctga |
191 |
Q |
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||||||||||| |||||||||||||| ||||| |
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| T |
2745816 |
tccaattgaccaacatacatgaaaacttctga |
2745785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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