View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_20 (Length: 376)
Name: NF19924_low_20
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 7388505 - 7388861
Alignment:
| Q |
1 |
ttcaagtctttatataatggagaattatttatttcatagtattattgtgattctactaacataggaggctgcttttaggtgctctttaatagttgcaaga |
100 |
Q |
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| T |
7388505 |
ttcaagtctttatataatagggaattatttatttcatagtattattgtgattctactaacataggaggctgcttttaggtgctctttaatagttgcaagg |
7388604 |
T |
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| Q |
101 |
ttttttccttnnnnnnnnnnntaattgcaagacttttatgttatgtttctgtaaatggtggcattgttaaaaaagattaaatgtgattggttggattcat |
200 |
Q |
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| T |
7388605 |
ttttttccttcaaaaaaaaa-taattgcaagacttttatgttatgtttctgtaaatggtggcattgttaaaaaagattaaatgtgattggttggattcat |
7388703 |
T |
|
| Q |
201 |
taaataagattcaactacaatggtagatcattatgttttccacggtgcttaaagtaggttgcaagtgtaacagatttttatgtcatttaattttgcttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7388704 |
taaataagattcaactacaatggtagatcattatgttttccacggtgcttaaagtaagttgcaagtgtaacagatttttatgtcatttaattttgcttaa |
7388803 |
T |
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| Q |
301 |
ctagattatataattaggactaattttagttaagcatttgtagacctagctagtatat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7388804 |
ctagattatataattaggactaattttagttaagcatttgtagacctagctagtatat |
7388861 |
T |
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