View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19924_low_21 (Length: 371)
Name: NF19924_low_21
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 38136031 - 38136365
Alignment:
| Q |
16 |
atattggataagaaagatacagtaaattatatagcatacaactgaatgacatttcaaatgataagtttcttacacaattaaacatagaaaccaatacatt |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136031 |
atattggataagaaagatacaataaattacatagcatacaactgaatgacatttcaaatgataagtttcttacacaattaaacatagaaaccaatacatt |
38136130 |
T |
|
| Q |
116 |
cactgtctacctcaagctcgtaagaatataaataatttgaaaattgtttgcagtccttcaataaatcttctaattcacttggtaaaattagttggaaaga |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38136131 |
cactgtctacctcaagctcgtaaaaatataaataatttgaaaattgtttgcagtccttcaataaatcttctaattcacatggtaaaattagttggaaaga |
38136230 |
T |
|
| Q |
216 |
aacaaaccaaacctgtttgtaagtcataattgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38136231 |
aacaaaccaaacctgtttgtaagtcatagttgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaacttctccaa |
38136330 |
T |
|
| Q |
316 |
atatcaggaactgttttccactcatccgagacgac |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136331 |
atatcaggaactgttttccactcatccgagacgac |
38136365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 38123027 - 38123144
Alignment:
| Q |
224 |
aaacctgtttgtaagtcataattgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctccaaatatcagg |
323 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||| |||||| | ||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38123027 |
aaacctgtttgtatgtcatagttgaaggaggatcatgatattgatctaccaaagctactttatcaccatacttctctgcagaagttctccaaatatcagg |
38123126 |
T |
|
| Q |
324 |
aactgttttccactcatc |
341 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
38123127 |
aacagctttccactcatc |
38123144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 35105434 - 35105339
Alignment:
| Q |
245 |
ttgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctccaaatatcaggaactgttttccactcat |
340 |
Q |
| |
|
|||||||||||| ||||||| |||||| | || | |||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35105434 |
ttgaaggaggatgatgatattgatctactaaggctactttatcaccatatttttcagcagaagatctccaaatatcaggaacaactttccactcat |
35105339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University