View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_23 (Length: 359)
Name: NF19924_low_23
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 35134166 - 35134485
Alignment:
| Q |
17 |
ttgggggtagtgcaaatactttaacattcaactcggtaagagagtaagagtgagacatattgaaaagat--caaaattgtgtatctttgagttatggatg |
114 |
Q |
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| T |
35134166 |
ttgggggtagtgcaaatactttaacattcaagtcggtaagagag--------agacatgttgaaaagatatcaaaattgtgtatctt-gagttatggatg |
35134256 |
T |
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| Q |
115 |
gtccgaggaccctttctatacaaccgagtaaagagttgttgagagacggttgcgattgtcgtgttttagtattgcaattgttggtcgttaaggtgaatta |
214 |
Q |
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| T |
35134257 |
gtctgaggacc-tttctatacaaccgaggaaagagttgttgagagacggtcgcgattgtcgtgttttagtattgcaattgttggtcgctaaggtgaatta |
35134355 |
T |
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| Q |
215 |
atctatgtttagaggcgttacgattcttccataaagatcctaagcttatgattgttggggtgttcgaccaatgtcacgtggccaaaggtattatggtatt |
314 |
Q |
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| T |
35134356 |
atctatgtttagaggcgttacgattcttccataaagatcctaagcttatgatcgttggggtgtccgaccaatgtcgcgtggccaaagg---tatggtatt |
35134452 |
T |
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| Q |
315 |
gatgtgtttgagccttctatgctattgggcctt |
347 |
Q |
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| T |
35134453 |
gatgtgtttgggccttctatgctattgggcctt |
35134485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 3212634 - 3212602
Alignment:
| Q |
53 |
taagagagtaagagtgagacatattgaaaagat |
85 |
Q |
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| T |
3212634 |
taagagagtaagagtgagagatattgaaaagat |
3212602 |
T |
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