View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_24 (Length: 355)
Name: NF19924_low_24
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 45641543 - 45641216
Alignment:
| Q |
17 |
ctatcttcagtctttt---gtgcctgttactaatggatattcttaaccaagatcttcgtttccttcaacgaaaaacaatttcgctttatccatgaaaatg |
113 |
Q |
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| T |
45641543 |
ctatcttcagtctttttttgtgcctgttactaatggatattcttaaccaagatcttcgtttccttcaatgaaaaacaatttcgctttatccatgaaaatg |
45641444 |
T |
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| Q |
114 |
ttgccacgtccactatatgcagcatgtttggtgagaacaatagctagtatgcaaacgccgttgtgacacattattaggaagtgcatacttcaatgctttt |
213 |
Q |
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| T |
45641443 |
ttgccacgtccactatatgcagcatgtttagtgagaacaatagctagtatgcaaacgccgttgtgacacattagtaggaagtgcatacttcaatgctttt |
45641344 |
T |
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| Q |
214 |
catacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatc |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45641343 |
catacatcatcaaccgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatc |
45641244 |
T |
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| Q |
314 |
ctcgggaattcccattgaaaaccctttg |
341 |
Q |
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| T |
45641243 |
ctcgggaattccccttgaaaaccctttg |
45641216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 341
Target Start/End: Complemental strand, 45648001 - 45647687
Alignment:
| Q |
27 |
tcttttgtgcctgttactaatggatattcttaaccaagatcttcgtttccttc----aacgaaaaacaatttcgctttatccatgaaaatgttgccacgt |
122 |
Q |
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|||| |||||||||||| |||||| || | || |||||||| |||||||||| |||||||||||||||| ||| | ||||||||||||||||| | |
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| T |
45648001 |
tcttctgtgcctgttaccaatggacatcttcaatcaagatctccgtttccttcttacaacgaaaaacaatttccatttcttcatgaaaatgttgccacat |
45647902 |
T |
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| Q |
123 |
ccactatatgcagcatgtttggtgagaacaatagctagtatgcaaacgccgttgtg-acacattattaggaagtgcatacttcaatgcttttcatacatc |
221 |
Q |
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| T |
45647901 |
ccactacaggcagtaagttcagtgaaaacaatagccattacgcgcatgccattggctacgcctcattaggaaatgaagacttcaatgtttttcataccgc |
45647802 |
T |
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| Q |
222 |
atcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaa |
321 |
Q |
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| T |
45647801 |
accaagcattcaaggattatcaggaatttcagactcttgtgctctctctctt-----ctgtcatctcaatccaataacacttcaagccagtcctcggaaa |
45647707 |
T |
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| Q |
322 |
ttcccattgaaaaccctttg |
341 |
Q |
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||||| |||| ||||||||| |
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| T |
45647706 |
ttccctttgataaccctttg |
45647687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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