View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_28 (Length: 314)
Name: NF19924_low_28
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 31221579 - 31221281
Alignment:
| Q |
16 |
atactagaatgagacatgctattggaaaagtatctaatccagataaaaatgatatgctttgtgttgtaaatagtttgtaggtccaattaaagcacaatta |
115 |
Q |
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| T |
31221579 |
atactagaatgagacatgctattggaaaagtatctaatccagataaaaatgatatgctttgtgttgtaaatagtttgtaggtccaattaaagcacaatta |
31221480 |
T |
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| Q |
116 |
tgatatgatttgtccctatttcttaaaaattcaaacaaacatgactaggtgcatcagcatttgcataggactgtgtgatataaagtgatacctgcatctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221479 |
tgatatgatttgtccctatttcttaaaaattcaaacaaacatgactaggtgcatcagcatttgcataggactgtgtgatataaagtgatacctgcatctt |
31221380 |
T |
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| Q |
216 |
gcaagtttcacttgttttcacctcctgttctattattcaaaaatcaagtaaattatttgttgtgtccaagaaaagggttaagtgggtatagaggaatat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221379 |
gcaagtttcacttgttttcacctcctgttctattattcaaaaatcaagtaaattatttgttgtgtccaagaaaagggttaagtgggtatagaggaatat |
31221281 |
T |
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