View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_29 (Length: 310)
Name: NF19924_low_29
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 36610658 - 36610357
Alignment:
| Q |
1 |
aatatagatccacaacactaccaacttgttccacttgttcttcaacataatttttattctttgacaaatcttctttaattcttgcacctgtataaacaca |
100 |
Q |
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| T |
36610658 |
aatatagatccacaacactaccaacttgttccacttgttcttcaacataatttttattctttgacaaatcttctttaattcttgcacctgtataaacaca |
36610559 |
T |
|
| Q |
101 |
acattttgcaacaacatccttaaccttgtctttccctgtttgaaaccaatttacatgctctttttccaatactcacctcagaaagtgctttgtcttttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36610558 |
acattttgcaacaacatccttaaccttgtctttccctatttgaaaccaatttacatgctctttttccaatactcacctcagaaagtgctttgtcttttct |
36610459 |
T |
|
| Q |
201 |
ctatcattattgatcttgaaagccattctttgtttccattccatcattattgtcagtgttagttctatacactttggatttcactgcacttcctaccttt |
300 |
Q |
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| T |
36610458 |
ctatcattattgatcttgaaagccattctttgtttccattccatcattattgtcagtgttagttctatacactttggatttcactgcacttcctaccttt |
36610359 |
T |
|
| Q |
301 |
gc |
302 |
Q |
| |
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|| |
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| T |
36610358 |
gc |
36610357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 45548468 - 45548507
Alignment:
| Q |
259 |
ttagttctatacactttggatttcactgcacttcctacct |
298 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |
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| T |
45548468 |
ttagttccatatactttggatttcactgcacttcctacct |
45548507 |
T |
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