View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_low_3 (Length: 708)

Name: NF19924_low_3
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19924_low_3
NF19924_low_3
[»] chr8 (1 HSPs)
chr8 (12-694)||(38770974-38771643)


Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 12 - 694
Target Start/End: Complemental strand, 38771643 - 38770974
Alignment:
Q  12 atgaactatgaagtatccatcggcttcatcgcctttaatgggtttcctctcccaactgcatttgtttcattcacaaggttcaaactcttgatttgatgat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38771643 atgaactatgaagtatccatcggcttcatcgcctttaatgggtttcctctcccaactacatttgtttcattcacaaggttcaaactcttgatttgatgat 38771544  T
Q  112 ttagaaagaaaatgaaatatcatttagctttttgttgatttgacaaacaattaacattctcacacaaattctatccatgtatagaatgaagatgcaaagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771543 ttagaaagaaaatgaaatatcatttagctttttgttgatttgacaaacaattaacattctcacacaaattctatccatgtatagaatgaagatgcaaagg 38771444  T
Q  212 attccactgaaaatgnnnnnnn-caaagctgaggaaactgtgaaagaagaaacattggaaacagagaaacctttggaggatgctaaaagcaacgagccaa 310  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771443 attccactgaaaatgaaaaaaaacaaagctgaggaaactgtgaaagaagaaacattggaaacagagaaacctttggaggatgctaaaagcaacgagccaa 38771344  T
Q  311 cattggaaaaaccatctcaggaaaccaaaaa-caatgaaccatctactgaacaagaatgtgcagttgttgaggaaaaaccttcattgcaaaataaaatca 409  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771343 cattggaaaaaccatctcaggaaaccaaaaaacaatgaaccatctactgaacaagaatgtgcagttgttgaggaaaaaccttcattgcaaaataaaatca 38771244  T
Q  410 ctgattcagcagctgaagagattgtgaagacagaaacacatgaagaagctaagaaaacttcacaagaaactagtaaaatcaatgaaccaactgttgtgaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38771243 ctgattcagcagctgaagagattgtgaagacagaaacacatgaagaagctaagaaaacttcacaagaaactagtaaaatcaatgaaccagctgttgtgaa 38771144  T
Q  510 acaaaataaaaatgatgttgcagctgaggtgaatatagaaacagcagaagctgaaacaaaaagcaatgagttgaacgaaccaatcaaactagaaaaatca 609  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771143 acaaaataaaaatgatgttgcagctgaggtgaagatagaaacaccagaagctgaaacaaaaagcaatgagttgaacgaaccaatcaaactagaaaaatca 38771044  T
Q  610 tctgagactattcacattgaaaatgtggtggttcctccggctgaggagaaagtgattgaagtggttttaacaaaagcagaatctg 694  Q
    ||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38771043 tctgagac---------------tgtggtggttcctccggctgaggagaaagtgattgaagtggttttaacaaatgcagaatctg 38770974  T

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