View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_32 (Length: 298)
Name: NF19924_low_32
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 38085526 - 38085817
Alignment:
| Q |
1 |
atggtaccttaacatgaattttgtatattaacaatcactatatatatatttacagtggtaattcaagatataatttgaaagaattttgataccttaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085526 |
atggtaccttaacatgaattttgtatattaacaatcgctatatatatatttacagtgctaattcaagatataatttgaaagaattttgataccttaacat |
38085625 |
T |
|
| Q |
101 |
gatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcacatatttgttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085626 |
gatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcacatatttgttctt |
38085725 |
T |
|
| Q |
201 |
gcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgcctatg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085726 |
gcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgcctatg |
38085817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 78 - 284
Target Start/End: Original strand, 38155614 - 38155820
Alignment:
| Q |
78 |
aaagaattttgataccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttctttt |
177 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||||| || |
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| T |
38155614 |
aaagaattatgataccttaacattgtttttgtagtattgcttaacaagagggttaataaagaagtcatcttcaattttgacattttgaccacgttctctt |
38155713 |
T |
|
| Q |
178 |
gcccactgcacatatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaa |
277 |
Q |
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|
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38155714 |
gcccactgcacatatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatattttcttgcctctgatatcacaa |
38155813 |
T |
|
| Q |
278 |
aatccaa |
284 |
Q |
| |
|
||||||| |
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|
| T |
38155814 |
aatccaa |
38155820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 290
Target Start/End: Original strand, 38142277 - 38142480
Alignment:
| Q |
87 |
tgataccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgc |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || | ||||||||||||| || |||||| |||||||||||||||| ||||||||||| |
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|
| T |
38142277 |
tgataccttaacattgtttttgtagtattgcttaacaagaggattaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgc |
38142376 |
T |
|
| Q |
187 |
acatatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatg |
286 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38142377 |
acatatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatatttgtttgcctctgatatcacaaaatccaatc |
38142476 |
T |
|
| Q |
287 |
ccta |
290 |
Q |
| |
|
|||| |
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|
| T |
38142477 |
ccta |
38142480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 38110714 - 38110914
Alignment:
| Q |
90 |
taccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcaca |
189 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || ||||||||||||| ||||||| || ||| |
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|
| T |
38110714 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
38110813 |
T |
|
| Q |
190 |
tatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgcct |
289 |
Q |
| |
|
||||| | || ||||| ||| ||||||||||||||||||||| ||||||||||| |||||| ||||| ||| |||||||||||||||||| ||| ||| |
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|
| T |
38110814 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtatttttttgactctgatatcacaaaatctaatccct |
38110913 |
T |
|
| Q |
290 |
a |
290 |
Q |
| |
|
| |
|
|
| T |
38110914 |
a |
38110914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 281
Target Start/End: Original strand, 38090586 - 38090789
Alignment:
| Q |
78 |
aaagaattttgataccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttctttt |
177 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| || || ||||| ||||| || |
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|
| T |
38090586 |
aaagaattatggtactttaacatgatttttgtagtattgcttaacaagagggtgtgtaaagaagtcgtcgtcattttttatgttatgaccgtgttctctt |
38090685 |
T |
|
| Q |
178 |
gcccactgcacatatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaa |
277 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||| |||||||||||| | ||||| ||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
38090686 |
gcccattgaacatatttgtttttgcctccaaaattattccaattattggctaagcttagtatcaatttcactccatatttgcttgcctctgatatcacaa |
38090785 |
T |
|
| Q |
278 |
aatc |
281 |
Q |
| |
|
|||| |
|
|
| T |
38090786 |
aatc |
38090789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 290
Target Start/End: Complemental strand, 45892466 - 45892272
Alignment:
| Q |
96 |
aacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcacatatttg |
195 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| || ||| |||| |||||||| || ||||| |||||||| ||||||| ||||| | ||||||| |
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|
| T |
45892466 |
aacatggtttttgtaatattgtttaacaataggatgtacgtagaaatcatcatcattgttgatgttttgaccctgttctttggcccatttaacatattga |
45892367 |
T |
|
| Q |
196 |
ttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgccta |
290 |
Q |
| |
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| || || ||| ||||||||||||||||||| || || ||||| | | |||||||| || | ||| ||||| ||||||||||||||| |||| |
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| T |
45892366 |
ctttttccaccataatcattccaattattcactaaacttagtatcaactgcactccattcttccctgcttctgaaatcacaaaatccaatcccta |
45892272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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