View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_low_34 (Length: 266)

Name: NF19924_low_34
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19924_low_34
NF19924_low_34
[»] chr3 (2 HSPs)
chr3 (1-249)||(31221050-31221298)
chr3 (90-239)||(39602215-39602364)
[»] chr8 (3 HSPs)
chr8 (90-201)||(33714241-33714352)
chr8 (66-146)||(12851185-12851265)
chr8 (90-146)||(30389108-30389164)
[»] chr7 (1 HSPs)
chr7 (62-119)||(19719042-19719099)
[»] chr2 (1 HSPs)
chr2 (137-240)||(39621866-39621969)
[»] chr5 (2 HSPs)
chr5 (56-201)||(14295459-14295605)
chr5 (94-167)||(41957460-41957533)
[»] chr1 (3 HSPs)
chr1 (136-177)||(1730869-1730910)
chr1 (90-155)||(25479581-25479646)
chr1 (137-217)||(33527199-33527280)
[»] chr6 (1 HSPs)
chr6 (119-155)||(2514702-2514738)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31221298 - 31221050
Alignment:
Q  1 gtgggtatagaggaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaacttatattgtgttcataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31221298 gtgggtatagaggaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaacttatattgtgttcataaat 31221199  T
Q  101 tgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagtttgactgtacttcatcttctgttatagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31221198 tgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagttcgactgtacttcatcttctgttatagaa 31221099  T
Q  201 agagtttattcataagctcaaattaagttgtttatccaaaggtagaaat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31221098 agagtttattcataagctcaaattaagttgtttatccaaaggtagaaat 31221050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 39602215 - 39602364
Alignment:
Q  90 tgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagtttgactgtacttcatctt 189  Q
    ||||||||||||||||||| ||||| || | ||| |||||| || |||||||||||| | ||||||| ||| ||| |||| ||| ||| ||  | |||||    
T  39602215 tgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttatacgcaacaatttaactttatgttatctt 39602314  T
Q  190 ctgttatagaaagagtttattcataagctcaaattaagttgtttatccaa 239  Q
     |  |||||||| || |||| ||||||||  || ||||||||||||||||    
T  39602315 tttctatagaaatagcttatgcataagctgcaaataagttgtttatccaa 39602364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 33714241 - 33714352
Alignment:
Q  90 tgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagtttgactgtacttcatctt 189  Q
    |||||||||  |||||||||||||| |||| ||| ||||   || |||||||||||||| |||||| |||  || ||| ||||||||| || || |||||    
T  33714241 tgttcataagctgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtacaaaatagtttgactttattttatctt 33714340  T
Q  190 ctgttatagaaa 201  Q
     |||||||||||    
T  33714341 gtgttatagaaa 33714352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 12851265 - 12851185
Alignment:
Q  66 aacttatgataacaacttatattgtgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaa 146  Q
    ||||||||| |||| ||||||   |||||||||  ||||||| |||||| || | ||| ||||||||| ||||||||||||    
T  12851265 aacttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataagctctcaaggaaagcttatgaaaa 12851185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 30389164 - 30389108
Alignment:
Q  90 tgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaa 146  Q
    ||||||||| ||||||||||||||| || | ||| |||| |||| ||||||||||||    
T  30389164 tgttcataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 19719099 - 19719042
Alignment:
Q  62 agagaacttatgataacaacttatattgtgttcataaattgttttcagcttatcttta 119  Q
    ||||||||||||| ||||||||||    |||||||||| |||||||||||||||||||    
T  19719099 agagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttatcttta 19719042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 39621969 - 39621866
Alignment:
Q  137 cttatgaaaataacttataaattacacgaaacagtttgactgtacttcatcttctgttatagaaagagtttattcataagct-caaattaagttgtttat 235  Q
    |||||||||| | |||||| |||| || ||| ||||||||| || || || || ||||||||||| |  ||||||||||||| |||| ||||||||||||    
T  39621969 cttatgaaaacagcttatagattatacaaaa-agtttgactttattttattttgtgttatagaaatatcttattcataagctgcaaaataagttgtttat 39621871  T
Q  236 ccaaa 240  Q
    |||||    
T  39621870 ccaaa 39621866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 14295605 - 14295459
Alignment:
Q  56 tgtctgagagaacttatgataacaacttatattgtgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttata 155  Q
    ||||||||||| ||||||| |||| |||||  | |||  ||||  |||||||||||||  | |||||| |||| |||| |||||| ||||| | ||||||    
T  14295605 tgtctgagagagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttata 14295506  T
Q  156 aattacacgaaa-cagtttgactgtacttcatcttctgttatagaaa 201  Q
      ||| | |||| |||||||||| || || ||||| |||||||||||    
T  14295505 gcttatatgaaaacagtttgactttattttatcttttgttatagaaa 14295459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 41957460 - 41957533
Alignment:
Q  94 cataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaa 167  Q
    ||||| ||||||||| ||||| || | ||| ||||||||| |||||||||||| | ||||||| ||||| ||||    
T  41957460 cataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaa 41957533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 1730910 - 1730869
Alignment:
Q  136 gcttatgaaaataacttataaattacacgaaacagtttgact 177  Q
    ||||||||||||||||||||| ||||| |||| |||||||||    
T  1730910 gcttatgaaaataacttataacttacatgaaatagtttgact 1730869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 25479646 - 25479581
Alignment:
Q  90 tgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttata 155  Q
    ||||||| | ||||||||||||||| || | ||| |||| |||| |||||||||||| ||||||||    
T  25479646 tgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttata 25479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 33527199 - 33527280
Alignment:
Q  137 cttatgaaaataacttataaattacacgaaa-cagtttgactgtacttcatcttctgttatagaaagagtttattcataagc 217  Q
    |||||||||| | |||||| |||| | |||| ||||||||||||| || ||||| |||| |||||| || ||||||||||||    
T  33527199 cttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagc 33527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 2514738 - 2514702
Alignment:
Q  119 aaaaggtctcaaggacagcttatgaaaataacttata 155  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  2514738 aaaagatctccaggacagcttatgaaaataacttata 2514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University