View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_35 (Length: 258)
Name: NF19924_low_35
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42802873 - 42803114
Alignment:
| Q |
1 |
ctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgacagagcaaaattggctagatggatggaaagcacacnnnnnnn |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42802873 |
ctttttacctaaaatcaaactttctttttcatttcaacaaggtag-tgctttcgttgacagagcaaaattggctagatggatggaaagcacacaaaaaaa |
42802971 |
T |
|
| Q |
101 |
taacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaacttatcacaatgattaggaaaatacatttgaataccacttatcacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
42802972 |
taacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaacttatcataatgattgggaaaatacatttgaataccacttatcacac |
42803071 |
T |
|
| Q |
201 |
cataggacagaaaccgcatttcaaagtacatgctagtgttttg |
243 |
Q |
| |
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| T |
42803072 |
cataggacagaaaccgcatttcaaagtacatgctagtgttttg |
42803114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25514649 - 25514417
Alignment:
| Q |
1 |
ctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgacagagcaaaattggctagatggatggaaagcacacnnnnnnn |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
25514649 |
ctttttacctaaaagcaaactttctttttcatttcagcaaggtaggtgctttctttgacagagcaaaagtggctagatggatggaaagcacaaaaaaata |
25514550 |
T |
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| Q |
101 |
----taacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaacttatcacaatgattaggaaaatacatttgaatac--cactta |
194 |
Q |
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| T |
25514549 |
aaaataacactacatttgcgaacatagacaatgatgtaagcaaagttcttaacagagattatcacaatgattgggaaaatacatttgaatacagaattta |
25514450 |
T |
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| Q |
195 |
tcacaccataggacagaaaccgcatttcaaagt |
227 |
Q |
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| T |
25514449 |
tcacaccatacgacagaaaccacatttcaaagt |
25514417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25520726 - 25520958
Alignment:
| Q |
1 |
ctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgacagagcaaaattggctagatggatggaaagcac----acnnn |
96 |
Q |
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|||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||| || ||||||| |||||||||||||||||||||| | |
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| T |
25520726 |
ctttttacctaaaagcaaactttctttttcatttcatcaaggtaggtgctttctttggcatagcaaaagtggctagatggatggaaagcaccaaaaaata |
25520825 |
T |
|
| Q |
97 |
nnnntaacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaacttatcacaatgattaggaaaatacatttgaatac--cactta |
194 |
Q |
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|||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
25520826 |
aaaataacactacatttgcgaacatagacaatgatgtaagcaaagttcttaacagagattatcacaatgattgggaaaatacatttgaatacataactta |
25520925 |
T |
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| Q |
195 |
tcacaccataggacagaaaccgcatttcaaagt |
227 |
Q |
| |
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|||||||||| |||||||| | ||||||||||| |
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| T |
25520926 |
tcacaccatacgacagaaatcacatttcaaagt |
25520958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 42799843 - 42799924
Alignment:
| Q |
146 |
taacagaacttatcacaatgattaggaaaatacatttgaataccacttatcacaccataggacagaaaccgcatttcaaagt |
227 |
Q |
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|
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
42799843 |
taacagaacttatcatggtgatttggaaaatacatttgaataccgcttatcacaccataggacagaaaccacatttcaaagt |
42799924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 49383 - 49470
Alignment:
| Q |
1 |
ctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgacagagcaaaattggctagatggatggaaag |
88 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
49383 |
ctttttacctaaaagcaaactttctttttcatttcaacaaggtaggtgctttctttgacagagcaaaagtggctagatggatggaaag |
49470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 27906708 - 27906789
Alignment:
| Q |
146 |
taacagaacttatcacaatgattaggaaaatacatttgaataccacttatcacaccataggacagaaaccgcatttcaaagt |
227 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
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| T |
27906708 |
taacagaacttatcacaatgattggtaaaatacatttgaataccacttatcataccacaggacagaaaccacatttcaaagt |
27906789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 7387852 - 7387801
Alignment:
| Q |
146 |
taacagaacttatcacaatgattaggaaaatacatttgaataccacttatca |
197 |
Q |
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||||||||||||||||||||| | | |||||||||||||||||||| ||||| |
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| T |
7387852 |
taacagaacttatcacaatgactggtaaaatacatttgaataccacatatca |
7387801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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