View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_low_38 (Length: 252)

Name: NF19924_low_38

Description: NF19924

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19924_low_38

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 39 - 252

Target Start/End: Original strand, 36322072 - 36322286

Alignment:

Q	39	ccgaaactggtttctaattttgtcatttcaaa-cacttaacggaaaatttagaaattaatttcatattttttcgtcgctaattcaactttatgtagtagc	137	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322072	ccgaaactggtttctaattttggcatttcaaaacacttaacggaaaatttagaaattaatttcatattttttcatcgctaattcaactttatgtagtagc	36322171	T

Q	138	tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaaga	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322172	tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaaga	36322271	T

Q	238	actgtgagacataaa	252	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322272	gctgtgagacataaa	36322286	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 158 - 248

Target Start/End: Original strand, 36329052 - 36329146

Alignment:

Q	158	ttaatcattaatattatgtatgtccatacatg----caggaagaagagctagttgatggaaaagttgattggaaaggaagaagaactgtgagaca	248	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	36329052	ttaattattaatattatgtatgtccatgcatgcatgcaggaagaagagttagttgatggaaaagttgattggagaggaagaagagctgtgagaca	36329146	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]