View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_39 (Length: 251)
Name: NF19924_low_39
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_39 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 42802632 - 42802874
Alignment:
| Q |
9 |
gaagaaaatgtatcttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt |
108 |
Q |
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| T |
42802632 |
gaagaatatgtatcttttcagtttcaacaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttgagtgtaggt |
42802731 |
T |
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| Q |
109 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
208 |
Q |
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| T |
42802732 |
ttggtatcactatggcgtgtcacaattatggtgatccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
42802831 |
T |
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| Q |
209 |
attctagtatactcatgtaagttaagcaacgcaagggttcgct |
251 |
Q |
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| T |
42802832 |
attctagtatacccatgtaagttaagcaacgcaagggttcgct |
42802874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 25514880 - 25514652
Alignment:
| Q |
23 |
ttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt----ttggtatcac |
118 |
Q |
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| T |
25514880 |
ttttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgcatggtatcac |
25514781 |
T |
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| Q |
119 |
tatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtat |
218 |
Q |
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| T |
25514780 |
tgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcat |
25514681 |
T |
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| Q |
219 |
actcatgtaagttaagcaacgcaagggtt |
247 |
Q |
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| T |
25514680 |
acccatgtaagttaagcaacgcaagggtt |
25514652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 25520494 - 25520727
Alignment:
| Q |
23 |
ttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttg----gtatcac |
118 |
Q |
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| T |
25520494 |
ttttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatatttttccctccttttaagagattctcttaagtatatgtatgcatggtatcac |
25520593 |
T |
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| Q |
119 |
tatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagta |
217 |
Q |
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| T |
25520594 |
tgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagca |
25520693 |
T |
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| Q |
218 |
tactcatgtaagttaagcaacgcaagggttcgct |
251 |
Q |
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| T |
25520694 |
tacccatgtaagttaagcaacgcaagggttcgct |
25520727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
132 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
189 |
Q |
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| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 49212 - 49267
Alignment:
| Q |
30 |
tttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctcctttt |
85 |
Q |
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| T |
49212 |
tttcaacaatgtaatctaagaatccaaatgaaaattctttattttccgctcctttt |
49267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 49316 - 49371
Alignment:
| Q |
183 |
aaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaac |
238 |
Q |
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| T |
49316 |
aaaatcaattaaaatgagtcactgtgattctaacatatccatgtaagttaagcaac |
49371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
132 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
171 |
Q |
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| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
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