View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_44 (Length: 228)
Name: NF19924_low_44
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_44 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 23940444 - 23940232
Alignment:
| Q |
1 |
tgctcaagaattttcctaagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgctcgttcttatttacatatatttttgata |
100 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23940444 |
tgctcaagaattgtcccaagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgcttgttcttatttacatatatttttgata |
23940345 |
T |
|
| Q |
101 |
aattttacttttgatcactttaacagtgttgctccagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23940344 |
aattttacttttgatcactttaacagtgttgctccagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatc |
23940245 |
T |
|
| Q |
201 |
atgtagtattttc |
213 |
Q |
| |
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||||||||||||| |
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| T |
23940244 |
atgtagtattttc |
23940232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 24005252 - 24005040
Alignment:
| Q |
1 |
tgctcaagaattttcctaagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgctcgttcttatttacatatatttttgata |
100 |
Q |
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||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24005252 |
tgctccagaactgtcccaagcttcaaattctttttattagaaaggtttgttgagagtagtatgtttgtttgcttgttcttatttacatatatttttgata |
24005153 |
T |
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| Q |
101 |
aattttacttttgatcactttaacagtgttgctccagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatc |
200 |
Q |
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||||||||||||||| ||| |||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||| |||| ||| ||||||||| |
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| T |
24005152 |
tattttacttttgatctttttgacagtggtgctcctgcttatcgaatgaatggaaatgcccaatttcggttcctgaatgtgtttcttctcacctcagatc |
24005053 |
T |
|
| Q |
201 |
atgtagtattttc |
213 |
Q |
| |
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||||| ||||||| |
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| T |
24005052 |
atgtactattttc |
24005040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 2467797 - 2467660
Alignment:
| Q |
18 |
aagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgctcgttcttatttacatatatttttgataaattttacttttgatca |
117 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| ||||| |||||||||| |||||| |||| |||||||| || |
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| T |
2467797 |
aagcttcaaattgtttttattagaaaggtttgtt--gagtaatatatttgtttgcttgttctattttacatata-ttttgaaaaatgttacttttcattc |
2467701 |
T |
|
| Q |
118 |
ctttaacagtgttgctccagcttatcgaatgaatggaaatg |
158 |
Q |
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|||| |||||| ||||||||||| | || ||||||||||| |
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| T |
2467700 |
ctttgacagtggagctccagcttagccaaagaatggaaatg |
2467660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 892 - 708
Alignment:
| Q |
18 |
aagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgctcgttcttatttacatatatttttgataaattttacttttgatca |
117 |
Q |
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|
|||||||||||| |||||||||| ||||||||||||| || ||| |||||||||| ||||| || | ||||||||| ||||||| || ||||| ||| |
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| T |
892 |
aagcttcaaattgtttttattagaaaggtttgttgag--taatatatttgtttgcttgttctgtttcaaatatatttt-gataaatgttgcttttcatcc |
796 |
T |
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| Q |
118 |
ctttaacagtgttgctccagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatcatgta |
205 |
Q |
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|||| |||||| | ||||||| ||| || ||||||||||| | | ||| |||| ||||||| |||| ||| |||||||||||||| |
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| T |
795 |
ctttgacagtggaggtccagctcatccaaggaatggaaatggccaaattcggttcttgaatgtgtttcgtctcacctcagatcatgta |
708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 37996872 - 37996821
Alignment:
| Q |
18 |
aagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttg |
71 |
Q |
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|
|||||||||||||||| |||||| |||||||||| |||||||||||||||||| |
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| T |
37996872 |
aagcttcaaattctttctattagaaaggtttgtt--gagtagtatgtttgtttg |
37996821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 19316757 - 19316687
Alignment:
| Q |
135 |
cagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatcatgta |
205 |
Q |
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||||| ||| || ||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||| |
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| T |
19316757 |
cagctcatctaaggaatggaaatgcccaatttcagttcttgaatgtgtttcatctcaccttagatcatgta |
19316687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 14435864 - 14435682
Alignment:
| Q |
20 |
gcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgctcgttcttatttacatatatttttgataaattttacttttgatcact |
119 |
Q |
| |
|
||||||||||||||| |||| |||||||| | ||||| ||| |||||||||| ||||| |||| ||||| |||| |||||| || ||||| ||| || |
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| T |
14435864 |
gcttcaaattcttttcattaaaaaggtttgct--gagtaatatatttgtttgcttgttctgctttaaatata-ttttaataaatgttgcttttcatccct |
14435768 |
T |
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| Q |
120 |
ttaacagtgttgctccagcttatcgaatgaatggaaatgcctgatttcagttcctgaatgtctttcatcttgcctcagatcatgta |
205 |
Q |
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|| |||||| | | ||||| ||| || ||||||||||| | | ||| ||| ||||||| |||| ||| |||||||||||||| |
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|
| T |
14435767 |
ttgacagtggaggtacagctcatccaaggaatggaaatggccaaattcggttattgaatgtgtttcgtctcacctcagatcatgta |
14435682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 14438527 - 14438491
Alignment:
| Q |
18 |
aagcttcaaattctttttattagtaaggtttgttgag |
54 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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| T |
14438527 |
aagcttcaaattctttatattaataaggtttgttgag |
14438491 |
T |
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