View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_low_5 (Length: 600)

Name: NF19924_low_5
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19924_low_5
NF19924_low_5
[»] chr2 (12 HSPs)
chr2 (17-568)||(38133926-38134492)
chr2 (185-297)||(36186585-36186698)
chr2 (181-273)||(26350440-26350532)
chr2 (162-280)||(5163808-5163929)
chr2 (185-293)||(32415359-32415466)
chr2 (185-284)||(30257768-30257868)
chr2 (185-273)||(16646958-16647047)
chr2 (401-514)||(38143345-38143456)
chr2 (185-280)||(16547705-16547801)
chr2 (203-297)||(39769819-39769915)
chr2 (162-306)||(40876891-40877038)
chr2 (162-232)||(28556646-28556718)
[»] chr6 (8 HSPs)
chr6 (162-280)||(12174336-12174457)
chr6 (185-301)||(21954453-21954570)
chr6 (185-284)||(31787856-31787956)
chr6 (186-280)||(32331539-32331634)
chr6 (185-246)||(33871039-33871100)
chr6 (249-286)||(35067108-35067145)
chr6 (203-235)||(10668917-10668949)
chr6 (204-307)||(33344881-33344985)
[»] chr8 (8 HSPs)
chr8 (221-301)||(24606849-24606929)
chr8 (185-269)||(28310233-28310317)
chr8 (162-297)||(13580333-13580471)
chr8 (175-297)||(31277919-31278043)
chr8 (185-225)||(17786556-17786596)
chr8 (204-286)||(36042852-36042934)
chr8 (185-297)||(13236223-13236336)
chr8 (185-226)||(32036790-32036831)
[»] chr3 (5 HSPs)
chr3 (162-297)||(168661-168797)
chr3 (162-273)||(33510096-33510210)
chr3 (192-272)||(46743995-46744076)
chr3 (185-270)||(39838508-39838593)
chr3 (185-232)||(33682703-33682750)
[»] chr7 (12 HSPs)
chr7 (204-291)||(49164758-49164845)
chr7 (185-284)||(42335933-42336033)
chr7 (185-294)||(26448413-26448523)
chr7 (185-290)||(33480473-33480578)
chr7 (204-284)||(22318652-22318733)
chr7 (185-280)||(12177849-12177944)
chr7 (185-273)||(21828202-21828290)
chr7 (162-280)||(26914335-26914456)
chr7 (250-297)||(15133282-15133329)
chr7 (230-293)||(45684011-45684074)
chr7 (185-239)||(9429370-9429424)
chr7 (185-297)||(3351121-3351234)
[»] chr4 (12 HSPs)
chr4 (227-297)||(51002653-51002723)
chr4 (165-290)||(2113858-2113986)
chr4 (194-273)||(7540403-7540484)
chr4 (185-297)||(45733987-45734101)
chr4 (221-297)||(48653745-48653822)
chr4 (185-268)||(8153225-8153307)
chr4 (165-284)||(29118490-29118613)
chr4 (251-290)||(37226342-37226381)
chr4 (162-284)||(23870063-23870188)
chr4 (185-219)||(50521290-50521324)
chr4 (204-280)||(35372102-35372179)
chr4 (205-288)||(40807830-40807914)
[»] chr1 (7 HSPs)
chr1 (185-307)||(35405377-35405500)
chr1 (204-297)||(29868767-29868861)
chr1 (162-280)||(1240443-1240568)
chr1 (204-297)||(4626870-4626963)
chr1 (250-297)||(3265441-3265488)
chr1 (230-303)||(45385203-45385276)
chr1 (185-272)||(33735750-33735838)
[»] chr5 (11 HSPs)
chr5 (185-290)||(3193504-3193610)
chr5 (185-272)||(502845-502931)
chr5 (188-239)||(18600231-18600283)
chr5 (229-297)||(27548508-27548576)
chr5 (185-232)||(3596953-3597000)
chr5 (185-239)||(16570529-16570584)
chr5 (164-284)||(20870652-20870771)
chr5 (168-271)||(8934081-8934185)
chr5 (204-280)||(25034345-25034422)
chr5 (162-307)||(32257650-32257798)
chr5 (229-273)||(19011532-19011576)
[»] scaffold0003 (1 HSPs)
scaffold0003 (164-284)||(327951-328073)
[»] scaffold0328 (1 HSPs)
scaffold0328 (192-262)||(4833-4906)
[»] scaffold0777 (1 HSPs)
scaffold0777 (166-290)||(5865-5992)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 38133926 - 38134492
Alignment:
Q  17 actcacatggtgtagggacgctcaaacaatgtttaatttctttttcccagctaaatatttgactatataaggatgatataggacaagg-tggccagcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38133926 actcacatggtgtagggacgctcaaacaatgtttaatttctttttcccagctaaatatttgactatataaggatgatataggacaagggtggccagcatg 38134025  T
Q  116 ggcgagaggggcgggccgctcagggcac-----------------taaaataattannnnnnnacttagtagttagtagtacataaatatttctttttaa 198  Q
    | ||||||||||||||||||||||||||                 |||||||||||       |||||||||||||||||||||||||||||||||||||    
T  38134026 gacgagaggggcgggccgctcagggcaccaattctttagagacactaaaataattatttttttacttagtagttagtagtacataaatatttctttttaa 38134125  T
Q  199 ctcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38134126 ctcgatttgattaattatattaaaaatattttttagagaaccttatttacgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataac 38134225  T
Q  299 taacagggccagaacactaaaagtcttaggaccggccctaatacgggaaattgcatagataatgtagtgtaatatatacctacannnnnnnnnatcggat 398  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  38134226 taaaagggccagaacactaaaagtcttaggaccggccctaatacgggaaattgcatagataatgtagtgtaatatatacctaca---ttttttatcggat 38134322  T
Q  399 aaatataatctatttcaagaatcaaagagagaatgacagtaattttgtagaagcagaaaacaacttgtgaaaattagttatattaaagaaacttatgacc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38134323 aaatataatctatttcaagaatcaaagagagaatgacagtaattttgtagaagcagaaaacaacttgtgaaaattagttatattaaagaaactaatgacc 38134422  T
Q  499 ctatcatctaacacttgtacaacttttcatgactcatgtcattaaataagctctttctaaaatctcctaa 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38134423 ctatcatctaacacttgtacaacttttcatgactcatgtcattaaataagctctttctaaaatctcctaa 38134492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 36186698 - 36186585
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||  |||||||||||||||| ||||||| |||||||||||| ||  ||   ||| ||||||||||||||||||||||| ||| ||    
T  36186698 atatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaagaa 36186599  T
Q  284 agacatttgaataa 297  Q
    | ||||| ||||||    
T  36186598 aaacattagaataa 36186585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 26350532 - 26350440
Alignment:
Q  181 ataaatatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaat 273  Q
    |||||||||| |||| |||||| ||||||||||| |||| ||||||||||||| | ||| ||||||  |||||||| ||||||| ||||||||    
T  26350532 ataaatatttattttaaactcgctttgattaattttattgaaaatattttttaaaaaactttatttatgaatgaattttttgcagcaaaaaat 26350440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 5163808 - 5163929
Alignment:
Q  162 acttagtagttagtagtacataaatattt--ctttttaactcgatttgattaattatattaaaaatatt-ttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||| || |||||||| |  |||||||| ||| |||||||||||||||| | |||||| ||||||| ||| ||  ||   |||||||||    
T  5163808 acttagtagttagtactatataaatatatatctttttaattcggtttgattaattatattgagaatattattttagaaaactttgattataaatgaatct 5163907  T
Q  259 tttgcaacaaaaaatgtaagaa 280  Q
    |||| |||||||||||||||||    
T  5163908 tttgtaacaaaaaatgtaagaa 5163929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 32415359 - 32415466
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaa 284  Q
    |||||||||||||||||  ||||||||||| |||| || ||| ||||||||||||||   ||  ||||| |||||||||||||||||||  |  ||||||    
T  32415359 atatttctttttaactcattttgattaattttattgaatata-tttttagagaacctcgattatgaatgcatcttttgcaacaaaaaatacagaaaaaaa 32415457  T
Q  285 gacatttga 293  Q
    |||||||||    
T  32415458 gacatttga 32415466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 30257868 - 30257768
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    ||||||||||| || ||| |||||||||||||||| ||||||| |||||||||||| ||  ||   ||| ||||||||| ||||||||||| |||| |||    
T  30257868 atatttcttttcaattcggtttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgcaagataaa 30257769  T
Q  284 a 284  Q
    |    
T  30257768 a 30257768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 16647047 - 16646958
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaat 273  Q
    |||||||||||||| | | ||||||||||| |||| ||||||| |||||||||||  ||| ||   |||||||||| |||||||||||||    
T  16647047 atatttctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaat 16646958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 514
Target Start/End: Original strand, 38143345 - 38143456
Alignment:
Q  401 atataatctatttcaagaatcaaagagagaatgacagtaa--ttttgtagaagcagaaaacaacttgtgaaaattagttatattaaagaaacttatgacc 498  Q
    |||| ||| ||||||| || |||||||||||| |||||||  ||||||| || ||||||||||| ||||||||| |||  |||||||  ||||||||| |    
T  38143345 atatgatccatttcaacaaccaaagagagaatcacagtaaatttttgtacaaacagaaaacaac-tgtgaaaataagt--tattaaa-caacttatgaac 38143440  T
Q  499 ctatcatctaacactt 514  Q
     |||||||||||||||    
T  38143441 atatcatctaacactt 38143456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 16547705 - 16547801
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatatt-ttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa 280  Q
    |||||| ||||||| | | |||||||||||||||| |||||||| ||||||| ||| ||  ||   |||| ||||||| ||||||||||||||||||    
T  16547705 atatttttttttaatttggtttgattaattatattgaaaatattattttagaaaactttgattataaatggatcttttacaacaaaaaatgtaagaa 16547801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 39769915 - 39769819
Alignment:
Q  203 atttgattaattatattaaaaatattttt-tagagaaccttatttccgaatgaatcttttgcaacaaaaaa-tgtaagaaaaaagacatttgaataa 297  Q
    |||| |||| ||||||| ||||||||||| |||||||| ||||||  ||  ||||||||| |||||||||| | |||||| || |||||||||||||    
T  39769915 atttaattagttatattgaaaatatttttgtagagaacattatttatgagcgaatcttttacaacaaaaaaatataagaagaatgacatttgaataa 39769819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 306
Target Start/End: Complemental strand, 40877038 - 40876891
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    |||| |||||||||| || ||||||||  |||||||||||| | || |||||||| |||| ||||||| |||||| ||||||||  ||  || |||||||    
T  40877038 acttggtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaatatatttttatagaaccttgattatgagtgaatct 40876939  T
Q  259 tttgcaacaaaaaatgtaagaaaaaagacatttgaataactaacaggg 306  Q
    |||  ||  | ||||| |||||||||||| ||||| ||| ||| ||||    
T  40876938 tttataatgagaaatggaagaaaaaagacgtttgattaattaaaaggg 40876891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 28556718 - 28556646
Alignment:
Q  162 acttagtagttagtagtacataaata--tttctttttaactcgatttgattaattatattaaaaatatttttt 232  Q
    ||||||||||||||| || ||| |||  |||| ||| || ||| |||||||||||||||||||||||| ||||    
T  28556718 acttagtagttagtactatatagatacatttcgtttaaattcggtttgattaattatattaaaaatatatttt 28556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 12174336 - 12174457
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||| || ||| ||||  |||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||| ||   |||||||||    
T  12174336 acttagtagttagtactatatagatatatttctttttaattcgttttgattaattatattaaaaatatatttttagagaactttaattgtaaatgaatct 12174435  T
Q  259 tttgcaacaaaaaatgtaagaa 280  Q
    |||| |||||||| || |||||    
T  12174436 tttgtaacaaaaactgcaagaa 12174457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 21954570 - 21954453
Alignment:
Q  185 atatttctttttaactcgatttgattaattatatt--aaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaa 282  Q
    |||||||||||||||| | |||||||||||  |||  |||||||||||||| ||| ||||| ||  |||| | ||||||||||||||||||  || || |    
T  21954570 atatttctttttaacttgttttgattaattccattgaaaaaatatttttta-agagccttaattatgaataagtcttttgcaacaaaaaatacaaaaaca 21954472  T
Q  283 aagacatttgaataactaa 301  Q
    ||||| || ||||||||||    
T  21954471 aagacgttggaataactaa 21954453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 31787856 - 31787956
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||| ||||||| ||| ||||||||||| |||| ||||||| ||| |||| ||| ||| ||   ||||||| ||||||||| ||||||| ||||||||    
T  31787856 atatttatttttaattcgctttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgcaactaaaaatgcaagaaaaa 31787955  T
Q  284 a 284  Q
    |    
T  31787956 a 31787956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 32331634 - 32331539
Alignment:
Q  186 tatttctttttaactcgatttgattaattatattaaaaatatttttt-agagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa 280  Q
    ||||||||||| | ||  ||| ||||||| | || |||||||||||| |||||| |||||||   ||| |||||||||||||||||||| ||||||    
T  32331634 tatttcttttttattcactttaattaattcttttgaaaatatttttttagagaatcttatttataaataaatcttttgcaacaaaaaatataagaa 32331539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 33871100 - 33871039
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttattt 246  Q
    ||||||||| |||||||| ||||||||  | |||  |||||||||||| |||||||||||||    
T  33871100 atatttcttcttaactcgctttgattatctctatcgaaaatatttttttgagaaccttattt 33871039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 35067108 - 35067145
Alignment:
Q  249 gaatgaatcttttgcaacaaaaaatgtaagaaaaaaga 286  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  35067108 gaatgaatcttatgcaagaaaaaatgtaagaaaaaaga 35067145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 10668949 - 10668917
Alignment:
Q  203 atttgattaattatattaaaaatattttttaga 235  Q
    ||||||||||||||||| |||||||||||||||    
T  10668949 atttgattaattatattgaaaatattttttaga 10668917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 33344881 - 33344985
Alignment:
Q  204 tttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataactaac 302  Q
    ||||||||||| |||| ||||||| |||||||| ||| ||  ||   ||||||| |||||||||||||||||  |||| ||| | |||||||||| |||     
T  33344881 tttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaa 33344980  T
Q  303 agggc 307  Q
    |||||    
T  33344981 agggc 33344985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 24606849 - 24606929
Alignment:
Q  221 aaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataactaa 301  Q
    ||||||||||||| ||||| ||||||   ||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  24606849 aaaatattttttaaagaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaa 24606929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 28310233 - 28310317
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaa 269  Q
    ||||| |||||||||||| ||||||||||| |||| |||| ||| |||| ||||||||||||  ||||| || ||||||||||||    
T  28310233 atattactttttaactcgttttgattaattctattgaaaaaattatttaaagaaccttatttatgaatggattttttgcaacaaa 28310317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 13580471 - 13580333
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||| ||||||||| || ||||||||  |||||||||| ||| ||||||||||| |||| ||||||| |||||| | ||| ||  ||   ||||||| |    
T  13580471 acttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaaatatatttttaaataactttggttataaatgaatat 13580372  T
Q  259 tttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    |||||||||||||||| |||| |||| | ||| ||||||    
T  13580371 tttgcaacaaaaaatgcaagacaaaaaatattagaataa 13580333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 31277919 - 31278043
Alignment:
Q  175 tagtacataaatatttctttttaactcgatttgattaattatattaaaaatatt--ttttagagaaccttatttccgaatgaatcttttgcaacaaaaaa 272  Q
    ||||||||  |||| | ||||||||||  ||||||||||| |||| ||||||||  ||||||||||||||  ||   ||||||||||||||| | |||||    
T  31277919 tagtacatgcatatatttttttaactcactttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaa 31278018  T
Q  273 tgtaagaaaaaagacatttgaataa 297  Q
    |  ||||| ||||| ||| ||||||    
T  31278019 ttcaagaagaaagagattcgaataa 31278043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 17786596 - 17786556
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaat 225  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  17786596 atatttctttttaactcgctttgattaatcatattaaaaat 17786556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 36042934 - 36042852
Alignment:
Q  204 tttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaaga 286  Q
    ||||||||||| |||| ||||||| ||||| ||||||||  ||  |||| ||| ||||||||||||||||  ||||| |||||    
T  36042934 tttgattaattttatttaaaatatattttaaagaaccttgattatgaattaattttttgcaacaaaaaatacaagaagaaaga 36042852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 13236223 - 13236336
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||| ||||||||||| || | ||||||| |||||||||||| ||  ||   || |||| |||||||||||| |||| ||||| ||    
T  13236223 atatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaagaa 13236322  T
Q  284 agacatttgaataa 297  Q
    | | ||| ||||||    
T  13236323 aaatattggaataa 13236336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 32036790 - 32036831
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaata 226  Q
    |||||||||||||||||| || ||||||||||||| ||||||    
T  32036790 atatttctttttaactcgtttggattaattatattgaaaata 32036831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 168797 - 168661
Alignment:
Q  162 acttagtagttagtagtacataaatat-ttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttt 260  Q
    |||||||||| || | || |||||||| || ||||||||||| | ||||||||| |||| ||||||| ||||||||||||||  ||  ||||||||||||    
T  168797 acttagtagtcagcactatataaatatattatttttaactcgctgtgattaattctattgaaaatatattttagagaaccttgattatgaatgaatcttt 168698  T
Q  261 tgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    || ||||||||||| || || ||||| ||| ||||||    
T  168697 tgtaacaaaaaatgcaacaagaaagaaattagaataa 168661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 33510210 - 33510096
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||  |||||| ||||  |||||||||| ||| |||||||||||  ||| ||||||| |||||||||||| ||| ||   |||||||||    
T  33510210 acttagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaactttaattataaatgaatct 33510111  T
Q  259 tttgcaacaaaaaat 273  Q
    |||||||||||||||    
T  33510110 tttgcaacaaaaaat 33510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 46743995 - 46744076
Alignment:
Q  192 tttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaa 272  Q
    ||||||||||| ||||||||||| |||||||||||| |||||  ||||||||| ||  ||||||||||||||||| ||||||    
T  46743995 tttttaactcgttttgattaattctattaaaaatatatttttgtagaaccttaattatgaatgaatcttttgcaaaaaaaaa 46744076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 39838508 - 39838593
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttat-ttccgaatgaatcttttgcaacaaaa 270  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||| | ||||||||   ||  ||||||||||||||||||||||    
T  39838508 atatttctttttaactcattatgattaattatattgaaaatatttttaa-agaacctttgattatgaatgaatcttttgcaacaaaa 39838593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 33682750 - 33682703
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatatttttt 232  Q
    |||||||||||||| ||  ||||||||||| |||||||||||||||||    
T  33682750 atatttctttttaattcactttgattaattctattaaaaatatttttt 33682703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 49164845 - 49164758
Alignment:
Q  204 tttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacattt 291  Q
    |||||||||||  |||||||||||||||||||||| |||||||  ||||||||||||||||  | |||||| ||||| ||||||||||    
T  49164845 tttgattaatttaattaaaaatattttttagagaatcttatttatgaatgaatcttttgcagaataaaatgcaagaagaaagacattt 49164758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 42336033 - 42335933
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||| ||| |||||||||| | ||||||| |||||| | ||| ||  ||   ||||||||||||||||||||||||||||||||||    
T  42336033 atatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatgaatcttttgcaacaaaaaatgtaagaaaaa 42335934  T
Q  284 a 284  Q
    |    
T  42335933 a 42335933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 26448413 - 26448523
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||  ||||||||||| || ||||| ||| |||||||||||| ||  |    ||||||||||||||||||||||||| ||||||||    
T  26448413 atatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaagaaaaa 26448512  T
Q  284 agacatttgaa 294  Q
    | | |||||||    
T  26448513 aaatatttgaa 26448523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 33480578 - 33480473
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||| ||| | | |||||||||||||||||||||||| |||||| ||||||||| ||  |||| |||||| ||||| |||||||  ||||| ||    
T  33480578 atatttctttctaaattgctttgattaattatattaaaaatatgtttttaaagaacctta-ttatgaattaatcttctgcaataaaaaatacaagaagaa 33480480  T
Q  284 agacatt 290  Q
    |||||||    
T  33480479 agacatt 33480473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 22318733 - 22318652
Alignment:
Q  204 tttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaa 284  Q
    |||||||||||||||| | ||||| |||||||| ||| ||| ||   ||| |||||||||||||||||||||||||||||||    
T  22318733 tttgattaattatattgagaatatatttttagaaaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaa 22318652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 12177849 - 12177944
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa 280  Q
    |||| ||||||||| ||| ||| ||||||| |||| ||||||| |||||||| ||| |||||   || |||||||||||||||||||||||||||||    
T  12177849 atatatctttttaattcggtttaattaattttattgaaaatatatttttagaaaactttattataga-tgaatcttttgcaacaaaaaatgtaagaa 12177944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 21828202 - 21828290
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaaaaaat 273  Q
    |||||||||||||||| | ||||||||||  |||| |||||| |||||||||||| ||  ||   |||||||||| |||||||||||||    
T  21828202 atatttctttttaacttgttttgattaatgctattgaaaatactttttagagaactttgattataaatgaatcttgtgcaacaaaaaat 21828290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 26914456 - 26914335
Alignment:
Q  162 acttagtagttagtagtacataaatatttct--ttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||| || ||| |||| | |  |||||| ||| |||||||||||||||| ||||||| |||||| | ||| ||| ||   ||||||| |    
T  26914456 acttagtagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaaaatatatttttaaataacgttaattataaatgaatat 26914357  T
Q  259 tttgcaacaaaaaatgtaagaa 280  Q
    |||||||||||||||| |||||    
T  26914356 tttgcaacaaaaaatgcaagaa 26914335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 15133329 - 15133282
Alignment:
Q  250 aatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    ||||||| |||| |||||||||||||||||||||| | ||||||||||    
T  15133329 aatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataa 15133282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 45684011 - 45684074
Alignment:
Q  230 tttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttga 293  Q
    |||||| || |||||||  |||||||||||||| |||||||||| ||| || ||||||||||||    
T  45684011 tttagataatcttatttatgaatgaatcttttgaaacaaaaaatataaaaataaagacatttga 45684074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 9429424 - 9429370
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaac 239  Q
    ||||||||||||| |||| ||||||||||| |||| |||||||| |||| |||||    
T  9429424 atatttctttttatctcgttttgattaattctattgaaaatattatttaaagaac 9429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 3351121 - 3351234
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||| ||||||||||| |||| ||| ||| |||||||| ||| ||  ||   ||||||| |||| |||||||||||| ||||| ||    
T  3351121 atatttctttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaagaa 3351220  T
Q  284 agacatttgaataa 297  Q
    | | |||| |||||    
T  3351221 aaatattttaataa 3351234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 51002723 - 51002653
Alignment:
Q  227 ttttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    ||||| ||||||||||||||  ||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  51002723 tttttcagagaaccttatttttgaatgaatcttttgcgataaaaaatgtaagaagaaagacatttgaataa 51002653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 2113858 - 2113986
Alignment:
Q  165 tagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatctttt 261  Q
    |||||||||||| |||||| ||||  |||||| ||| | | |||||||||||||||| ||||||| |||||| ||||||||  ||  |||| ||||||||    
T  2113858 tagtagttagtactacatagatatatttctttctaaattgctttgattaattatattgaaaatatgtttttaaagaaccttgattatgaattaatctttt 2113957  T
Q  262 gcaacaaaaaatgtaagaaaaaagacatt 290  Q
    |||| |||||||  ||||| |||||||||    
T  2113958 gcaataaaaaatacaagaagaaagacatt 2113986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 7540484 - 7540403
Alignment:
Q  194 tttaactcgatttgattaattatattaaaaata---ttttttagagaaccttatttccgaatgaatcttttgcaacaaaaaat 273  Q
    ||||||| | ||||||||||| |||||||||||   ||||||||| ||||||||||  |||||||||||||||||||||||||    
T  7540484 tttaacttgttttgattaattctattaaaaataattttttttaga-aaccttatttatgaatgaatcttttgcaacaaaaaat 7540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 45734101 - 45733987
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatattttttagagaaccttatttccgaatgaatcttttgcaacaa--aaaatgtaagaaaa 282  Q
    ||||||||||||||| |  ||||||||||| || |||   | ||||||||| ||||||||||  ||| ||||||||||||| ||  |||||||||||| |    
T  45734101 atatttctttttaacccactttgattaattctactaatttttttttttagacaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaaga 45734002  T
Q  283 aagacatttgaataa 297  Q
    |||||||| ||||||    
T  45734001 aagacattcgaataa 45733987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 48653745 - 48653822
Alignment:
Q  221 aaaatatttt-ttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    |||||||||| |||||||| |||| ||  |||||||||||||||||||||| ||| ||||| ||||||||| ||||||    
T  48653745 aaaatattttcttagagaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataa 48653822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 8153307 - 8153225
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaa 268  Q
    ||||||| |||||||||| |||||||||||| | | ||||||| |||||||||||||||| ||  | |||| |||||||||||||    
T  8153307 atatttcgttttaactcgttttgattaattacagtgaaaatatatttttagagaaccttagtt--gcatgattcttttgcaacaa 8153225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 29118490 - 29118613
Alignment:
Q  165 tagtagttagtagtacataaatat--ttctttttaactcgatttga-ttaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttt 260  Q
    |||||||||||| |||||| ||||  |||||||||| | | ||| | ||||||||||| ||||||| |||||| ||||| ||  ||  |||||||| |||    
T  29118490 tagtagttagtactacatagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatattt 29118589  T
Q  261 tgcaacaaaaaatgtaagaaaaaa 284  Q
    ||||| ||||||||||| ||||||    
T  29118590 tgcaataaaaaatgtaaaaaaaaa 29118613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 37226342 - 37226381
Alignment:
Q  251 atgaatcttttgcaacaaaaaatgtaagaaaaaagacatt 290  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  37226342 atgaatcttttgcaacaaaaaatgaaataaaaaagacatt 37226381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 23870063 - 23870188
Alignment:
Q  162 acttagtagttagtagtacataaatatttcttttt--aactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||| || ||| |||| | |||||  || ||| ||||||||||| |||| ||||||| |||||||| ||| ||  ||   ||||||| |    
T  23870063 acttagtagttagtactatatagatatatatttttttaattcgttttgattaattctattgaaaatatatttttagataactttgattataaatgaatat 23870162  T
Q  259 tttgcaacaaaaaatgtaagaaaaaa 284  Q
    |||||||||||||| | |||||||||    
T  23870163 tttgcaacaaaaaaagcaagaaaaaa 23870188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 50521324 - 50521290
Alignment:
Q  185 atatttctttttaactcgatttgattaattatatt 219  Q
    |||||||||||||||||| ||||||||||||||||    
T  50521324 atatttctttttaactcgttttgattaattatatt 50521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 35372179 - 35372102
Alignment:
Q  204 tttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa 280  Q
    |||||||||||||||| ||||||| |||||||||| | ||| ||   || ||||||  ||||||||||||||||||||    
T  35372179 tttgattaattatattgaaaatatatttttagagagctttaattataaacgaatctcatgcaacaaaaaatgtaagaa 35372102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 40807914 - 40807830
Alignment:
Q  205 ttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagaca 288  Q
    |||||||||| |||||||||||| |||||||| ||| ||  ||  ||||||||||| | |||||||||||| || || |||||||    
T  40807914 ttgattaattctattaaaaatatgtttttagataacattgattatgaatgaatcttatccaacaaaaaatgcaaaaagaaagaca 40807830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 185 - 307
Target Start/End: Original strand, 35405377 - 35405500
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| ||| |||||||||||||||| |||| || |||||||| ||| ||  ||   ||||||| ||||||||||||||||| ||||| ||    
T  35405377 atatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaatgcaagaagaa 35405476  T
Q  284 agacatttgaataactaacagggc 307  Q
    | | |||||||||| ||| |||||    
T  35405477 aaatatttgaataattaaaagggc 35405500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 29868861 - 29868767
Alignment:
Q  204 tttgattaattatattaaaaatatttt-ttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    ||||||||||| ||||||||||||||| ||| | |||| ||||| |||||| || ||||||||||||| || ||| || ||| ||||||||||||    
T  29868861 tttgattaattctattaaaaatattttgttaaataaccctattttcgaatggattttttgcaacaaaagatataaaaataaatacatttgaataa 29868767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 1240443 - 1240568
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaata-----ttttttagagaaccttatttccgaatga 254  Q
    ||||||||||||||| || ||||||||  ||||||||||  || ||||||||||| |||| ||||||     ||||||||||||| |   ||   |||||    
T  1240443 acttagtagttagtactatataaatatatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatga 1240542  T
Q  255 atcttttgcaacaaaaaatgtaagaa 280  Q
    |||||||||||||||||||| |||||    
T  1240543 atcttttgcaacaaaaaatgcaagaa 1240568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 4626963 - 4626870
Alignment:
Q  204 tttgattaattatattaaaaatatt-ttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa-aaaagacatttgaataa 297  Q
    |||||||||||||||| |||||||| ||||||| |  ||| |||  |||||| ||||||||||||||||||  || || |||||||||||||||||    
T  4626963 tttgattaattatattgaaaatattattttagata--cttttttatgaatgattcttttgcaacaaaaaataaaaaaataaaagacatttgaataa 4626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 3265488 - 3265441
Alignment:
Q  250 aatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    ||||||||||||||||||||||||| | ||| ||||||||| ||||||    
T  3265488 aatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataa 3265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 45385276 - 45385203
Alignment:
Q  230 tttagagaacctt-atttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataactaaca 303  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||  ||||  ||| | ||||||||||||||||    
T  45385276 tttagagaaccttgattttc-aatgaatcttttgcaacaaaaaatacaagaggaaaaatatttgaataactaaca 45385203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 33735838 - 33735750
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaa 272  Q
    |||||||||||||| | | |||||||||||||||| ||||||| |||||||| ||| ||  ||   |||||||||||||| | ||||||    
T  33735838 atatttctttttaatttggtttgattaattatattgaaaatatatttttagacaactttgattataaatgaatcttttgccaaaaaaaa 33735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 3193610 - 3193504
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaa 283  Q
    |||||||||||||| | | ||||| |||||||||| ||||||| |||||| ||||| ||  ||  ||||||||||||||||| |||||||| ||||| ||    
T  3193610 atatttctttttaaattgctttgaataattatattgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaa 3193511  T
Q  284 agacatt 290  Q
    |||||||    
T  3193510 agacatt 3193504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 502845 - 502931
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaa 272  Q
    |||||||||||||||||  ||||||||||| |||| ||||||| |||||||||||| ||  ||  ||||||||||||||||| ||||||    
T  502845 atatttctttttaactc--tttgattaattctattgaaaatatatttttagagaactttgattatgaatgaatcttttgcaaaaaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 18600231 - 18600283
Alignment:
Q  188 tttctttttaactcgatttgattaattatattaaaaatat-tttttagagaac 239  Q
    ||||||||| | |||||||||||||||||||| ||||||| ||||||||||||    
T  18600231 tttctttttgaatcgatttgattaattatattgaaaatatgtttttagagaac 18600283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 27548576 - 27548508
Alignment:
Q  229 ttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataa 297  Q
    |||||||||| |||||||  |||||||| ||| |||  ||||||| |||||| ||||||||||||||||    
T  27548576 ttttagagaatcttatttatgaatgaatttttcgcactaaaaaatataagaagaaagacatttgaataa 27548508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 3597000 - 3596953
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatatttttt 232  Q
    |||||||||||||| ||| ||||||||||| |||||||||||| ||||    
T  3597000 atatttctttttaattcgttttgattaattctattaaaaatatatttt 3596953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 16570584 - 16570529
Alignment:
Q  185 atatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaac 239  Q
    |||||||||||||| ||  ||||||||||| |||||||||||| ||||||||||||    
T  16570584 atatttctttttaattcactttgattaattctattaaaaatatatttttagagaac 16570529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 20870652 - 20870771
Alignment:
Q  164 ttagtagttagtagtacataaatatttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttg 262  Q
    ||||||||||||| || |||  ||||||||||||| ||  ||||||||||| |||| | ||||| |||||||| ||| ||  ||   ||||||| || ||    
T  20870652 ttagtagttagtactatata--tatttctttttaattccctttgattaattttattgataatatatttttagataactttgattataaatgaatattctg 20870749  T
Q  263 caacaaaaaatgtaagaaaaaa 284  Q
    |||||||||||| |||||||||    
T  20870750 caacaaaaaatgcaagaaaaaa 20870771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 8934081 - 8934185
Alignment:
Q  168 tagttagtagtacataaatat-ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaa 265  Q
    |||||||| ||||||| |||| || ||||||||||  |||||||||||||||| || |||| ||||||||||  |||| ||  ||||||||| |||| ||    
T  8934081 tagttagt-gtacatatatatattttttttaactcattttgattaattatattgaagatatatttttagagagtcttaattatgaatgaatcatttgtaa 8934179  T
Q  266 caaaaa 271  Q
    ||||||    
T  8934180 caaaaa 8934185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 25034422 - 25034345
Alignment:
Q  204 tttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttgcaacaaaaaatgtaagaa 280  Q
    ||||||||||| |||||||||| | |||||||| ||| ||| |    ||||||| |||||||||||||||||||||||    
T  25034422 tttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaacaaaaaatgtaagaa 25034345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 32257798 - 32257650
Alignment:
Q  162 acttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatct 258  Q
    ||||||||||||||| |||||| ||||  || ||||||| | | ||||||||||| |||| |||||||  ||||||||||| ||  ||   ||||||| |    
T  32257798 acttagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatacttttagagaactttgattataaatgaattt 32257699  T
Q  259 tttgcaacaaaaaatgtaagaaaaaagacatttgaataactaacagggc 307  Q
    | || ||||||||||| ||||| ||| | ||| |||||| ||| |||||    
T  32257698 tgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagggc 32257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 19011532 - 19011576
Alignment:
Q  229 ttttagagaaccttatttccgaatgaatcttttgcaacaaaaaat 273  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||    
T  19011532 ttttagagaaccttatttatgaataaatcatttgcaacaaaaaat 19011576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 327951 - 328073
Alignment:
Q  164 ttagtagttagtagtacataaatatttctttttaactcgatttgattaattatattaaaaata--ttttttagagaaccttatttccgaatgaatctttt 261  Q
    |||||| || |||||| ||| |||| | | ||||||||  ||||||||||| |||||||||||  ||||||| | ||| ||||||  ||||| ||||||     
T  327951 ttagtaattggtagtatatacatatatttctttaactcactttgattaattctattaaaaatattttttttataaaactttatttatgaatggatcttta 328050  T
Q  262 gcaacaaaaaatgtaagaaaaaa 284  Q
     ||| ||||||||||||||||||    
T  328051 acaataaaaaatgtaagaaaaaa 328073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 4833 - 4906
Alignment:
Q  192 tttttaactcgatttgattaattatatt-aaaaatatttt--ttagagaaccttatttccgaatgaatcttttg 262  Q
    ||||||||||| ||| |||||||||||| |||||||||||  |||||||| |||||||  ||||||||||||||    
T  4833 tttttaactcgttttaattaattatattgaaaaatatttttattagagaatcttatttatgaatgaatcttttg 4906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 5865 - 5992
Alignment:
Q  166 agtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttccgaatgaatcttttg 262  Q
    ||||||||||| |||||| ||||  |||||| ||| | | |||||||||||||||| ||||||| |||||| ||||  ||  ||  |||||||| |||||    
T  5865 agtagttagtactacatagatatatttctttctaaattgctttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaattttttg 5964  T
Q  263 caacaaaaaatgtaagaaaaaagacatt 290  Q
    ||| |||||||  | ||| |||||||||    
T  5965 caataaaaaatacatgaagaaagacatt 5992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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