View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_7 (Length: 520)
Name: NF19924_low_7
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 6985259 - 6984949
Alignment:
| Q |
10 |
acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985259 |
acatcatcagcgaactcaccatccatgggtgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa |
6985160 |
T |
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| Q |
110 |
atataaggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttac |
209 |
Q |
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| T |
6985159 |
atataaggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttac |
6985060 |
T |
|
| Q |
210 |
tggttggttagtatataagctaagttaagcatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaata |
309 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985059 |
tggttggttagtatataagctaacttaagtatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaata |
6984960 |
T |
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| Q |
310 |
caacaagcttt |
320 |
Q |
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||||||||||| |
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| T |
6984959 |
caacaagcttt |
6984949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 351 - 502
Target Start/End: Complemental strand, 6984702 - 6984551
Alignment:
| Q |
351 |
cttgttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaa |
450 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6984702 |
cttgttacaaaccagggaaaacccgaggaagtgtagtcataagcacggaagagacaatccattgatacttggaggtgagataatttgtttctgcctcaaa |
6984603 |
T |
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| Q |
451 |
attactatgccgtccctcttctgacatttgatcattgaacgattgtaaagca |
502 |
Q |
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| T |
6984602 |
attattatgcattccctcttctgacatttgatcattgaaagattgtaaagca |
6984551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 31964142 - 31964262
Alignment:
| Q |
10 |
acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa |
109 |
Q |
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|||||||||| |||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| |
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| T |
31964142 |
acatcatcagtgaactccccatccatgactgtacttaactcctccagccttcttttaaaataccaatgcaatatagctaatggtagcaaatgaaaaagaa |
31964241 |
T |
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| Q |
110 |
atataaggccaaatagaaaaa |
130 |
Q |
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||| || ||| | |||||||| |
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| T |
31964242 |
atacaaagccgattagaaaaa |
31964262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 454
Target Start/End: Original strand, 31900745 - 31900844
Alignment:
| Q |
355 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta |
454 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| |||||||| ||||||| ||||||||| |
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| T |
31900745 |
ttacaaaccagggaaaacgcgaggaagtgtagccataagcacggaagagacagtccattggtacttagaggtaaggtaattcctttctgcttcaaaatta |
31900844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 355 - 454
Target Start/End: Original strand, 31964541 - 31964640
Alignment:
| Q |
355 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta |
454 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||||||| |
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| T |
31964541 |
ttacaaaccagggaaaacgcgaggaagtgtggccataagcacagaagagacagtccattgatacttagaggtaaggtaattcctttctgcttcaaaatta |
31964640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 31900347 - 31900449
Alignment:
| Q |
10 |
acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa |
109 |
Q |
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|||||||||| |||||| ||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| ||| ||| |
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| T |
31900347 |
acatcatcagtgaactccccatccatgactgtacttaactcctccagccttcttttaaaataccagtgcaatatagctaatggtagcaaatgaaaaggaa |
31900446 |
T |
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| Q |
110 |
ata |
112 |
Q |
| |
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||| |
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| T |
31900447 |
ata |
31900449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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