View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19925_high_1 (Length: 312)
Name: NF19925_high_1
Description: NF19925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19925_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 31612100 - 31612412
Alignment:
| Q |
1 |
tgtgtaaataaaatttagttactgctaaggcc-taaatatattgttcaaaatcttaaattggcacaaatacaatttcgatacctatactttatctcattt |
99 |
Q |
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| T |
31612100 |
tgtgtaaataaaatttagttactgataaagccctaaatataatgttcaaaatcttaaattggcacaaatacaatttcgatccctatactttatctcattt |
31612199 |
T |
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| Q |
100 |
acgagtttggttcttcatttttaaattcatgatttaggtcaataacttcaaaatgcatgaacttttttctacctatacaatttgatgctgaattttaata |
199 |
Q |
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| T |
31612200 |
atgagtttggttcttcatttttaaattcatgatttaggtcaataacttcaaaatgcatgaacttttttctgcctatacaatttgatgttgaattttaata |
31612299 |
T |
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| Q |
200 |
tcatccatgttttttacatgtagttatcttatctattaaccttgtgtaggggctggaatccttggtcatctctctgattcgtttcttggatgaaaaggat |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
31612300 |
tcatccatgttttttatatgtagttatcttatctattaaccttgtgtaggggctggaatctttggtcatctctctgattcgtttcttggacgaaaaggat |
31612399 |
T |
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| Q |
300 |
ctctcacgatagt |
312 |
Q |
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||||||||||||| |
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| T |
31612400 |
ctctcacgatagt |
31612412 |
T |
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