View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19925_high_2 (Length: 223)
Name: NF19925_high_2
Description: NF19925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19925_high_2 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 41528064 - 41528199
Alignment:
| Q |
73 |
actctcagcacttgcggaacatatactcaatttgtgttttcaagatctatttattattttatagcattttaaatgttctctctcaataagtacctaggta |
172 |
Q |
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| T |
41528064 |
actctcagcacttgcggtacatatacggaatttgtgttttcaagatgtatttattattttgtagcattttaaatgttctctctcaataagtacctaggta |
41528163 |
T |
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| Q |
173 |
gattgctaaggctttagagattttaacatgtaaagt |
208 |
Q |
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| T |
41528164 |
gattgctaaggctttagagattttaccatgtaaagt |
41528199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 39889206 - 39889133
Alignment:
| Q |
135 |
agcattttaaatgttctctctcaataagtacctaggtagattgctaaggctttagagattttaacatgtaaagt |
208 |
Q |
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| T |
39889206 |
agcattttaaatgtttactctcaataagtacctttgtagattgctaaggctttagagattttaacatgtaaagt |
39889133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 40097629 - 40097695
Alignment:
| Q |
134 |
tagcattttaaatgttctctctcaataagtacctaggtagattgctaaggctttagagattttaaca |
200 |
Q |
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| T |
40097629 |
tagcattttaaatgttttctttgaattagatccttggtagattgctaaagctttagagattttaaca |
40097695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 39882067 - 39881970
Alignment:
| Q |
111 |
ttcaagatctatttattattttatagcattttaaatgttctctctcaataagtacctaggtagattgctaaggctttagagattttaacatgtaaagt |
208 |
Q |
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| T |
39882067 |
ttcaagatgtatttagtactttgtagcattaaaattgttttctctgaattaggtcattggtagattgctaaagctttcgagattttaacatgtaaagt |
39881970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 725 - 860
Alignment:
| Q |
73 |
actctcagcacttgcggaacatatactcaatttgtgttttcaagatctatttattattttatagcattttaaatgttctctctcaataagtacctaggta |
172 |
Q |
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||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
725 |
actctcagcacttgcggtacatataccgaattagtgttttcaagatgtatttattattttgtagcattttaaatgttctctttcaataagtacctcggta |
824 |
T |
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| Q |
173 |
gattgctaaggctttagagattttaacatgtaaagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
825 |
gattgctaaggctttagagattttaacatgtaaagt |
860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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