View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19926_high_12 (Length: 302)
Name: NF19926_high_12
Description: NF19926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19926_high_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 29195461 - 29195749
Alignment:
| Q |
14 |
aggcatgtgggatttcttcattcctagttacgttccaaaaaagattcaataattgaggagctttaatagaacatatcctcatctgacctcgacagtctaa |
113 |
Q |
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| T |
29195461 |
aggcatgtgggatttcttcattcctagttacgttccaaaaaagattcaataattgaggagctttaatagaacatatcctcatctgacctcgacagtctaa |
29195560 |
T |
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| Q |
114 |
ggaagttagattcaatgcatcaatgtctaagttccaagaaacactgtaaaagtcaactatattcaaacgacgcaacgttggattgataatatggatggaa |
213 |
Q |
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| T |
29195561 |
ggaagttagattcaatgcatcaatgtctaagttccaagaaacactgtaaaagtcaactatattcaaacgacgcaacgttggattgataatatggatggaa |
29195660 |
T |
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| Q |
214 |
gactcgaatgtgcatccccataaggttagttcctcaagttgatgacatttagaaaacaaactaggcagaaaatcttttggcacaagaac |
302 |
Q |
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| T |
29195661 |
gactcgaatgtgcatccccataaggttagttcctcaagttgatgacatttagaaaacaaactaggcagaaaatcttttggcacaagaac |
29195749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 299
Target Start/End: Complemental strand, 29204884 - 29204672
Alignment:
| Q |
78 |
aatagaacatatcctcatctgacctcgacagtctaaggaagttagattcaatgcatcaatgtc---taagttccaagaaacactgtaaaagtcaactata |
174 |
Q |
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| T |
29204884 |
aatacaacatatcctcatttgacctctatagtctaaggaagttatattcaatgcatcaatgtcgtctaagttccaaggaacattgtcaaagtcaattatg |
29204785 |
T |
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| Q |
175 |
ttcaaacgacgcaacgttggattgataatatggatggaagactcgaatgtgcatccccataaggttagttcctcaagttgatgacatttagaaaacaaac |
274 |
Q |
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| T |
29204784 |
ctcaaccgacgcaatgttggactgataatatggatggaaaactcgaatgtgcatccc------------tcctcaagttggtgacaattagaaaacaaac |
29204697 |
T |
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| Q |
275 |
taggcagaaaatcttttggcacaag |
299 |
Q |
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| T |
29204696 |
taggcaggacatattttggtacaag |
29204672 |
T |
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