View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19926_high_5 (Length: 357)

Name: NF19926_high_5
Description: NF19926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19926_high_5
NF19926_high_5
[»] chr7 (4 HSPs)
chr7 (1-332)||(6723953-6724283)
chr7 (88-127)||(22334221-22334260)
chr7 (89-162)||(11466937-11467010)
chr7 (134-178)||(4995902-4995945)
[»] chr5 (7 HSPs)
chr5 (1-174)||(18179240-18179410)
chr5 (104-174)||(20101000-20101070)
chr5 (2-114)||(7741250-7741362)
chr5 (43-128)||(30791606-30791690)
chr5 (105-173)||(16072261-16072329)
chr5 (105-177)||(19571017-19571090)
chr5 (96-161)||(20695926-20695991)
[»] chr8 (5 HSPs)
chr8 (11-179)||(6887069-6887225)
chr8 (9-75)||(8541759-8541825)
chr8 (115-162)||(13528979-13529026)
chr8 (115-162)||(13618518-13618565)
chr8 (82-164)||(35134469-35134551)
[»] chr4 (6 HSPs)
chr4 (58-177)||(21048325-21048442)
chr4 (104-178)||(18778301-18778375)
chr4 (42-174)||(33520125-33520256)
chr4 (109-174)||(8926417-8926482)
chr4 (96-164)||(42498738-42498807)
chr4 (88-153)||(9575847-9575912)
[»] chr2 (5 HSPs)
chr2 (84-177)||(31275245-31275338)
chr2 (110-174)||(25461225-25461289)
chr2 (112-164)||(19004576-19004628)
chr2 (58-177)||(21847297-21847415)
chr2 (214-263)||(13589906-13589955)
[»] chr1 (4 HSPs)
chr1 (41-130)||(28411527-28411614)
chr1 (70-176)||(23420498-23420602)
chr1 (88-159)||(23506766-23506837)
chr1 (82-177)||(33175505-33175600)
[»] chr6 (8 HSPs)
chr6 (24-162)||(12960292-12960423)
chr6 (41-174)||(21604662-21604793)
chr6 (41-129)||(26498765-26498851)
chr6 (42-152)||(12966952-12967060)
chr6 (42-152)||(12969138-12969246)
chr6 (42-152)||(12971324-12971432)
chr6 (58-177)||(16440501-16440618)
chr6 (274-310)||(23072516-23072552)
[»] chr3 (1 HSPs)
chr3 (91-177)||(7779421-7779507)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 6724283 - 6723953
Alignment:
Q  1 tacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaatt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  6724283 tacttctaaattacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatt-atttctaacaattt 6724185  T
Q  101 ccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgtcacacaacttaatgcatgcatt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||    
T  6724184 ctgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtatgatttggtgacacataacttaatacatgcatt 6724085  T
Q  201 gcgcatccaccactagctgaccacttttgaattcttcttagctacatgacatgcaactcatagtgcgcaacacacatctaccagtagttgaaccttatgc 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6724084 gcgcatccaccagtagctgaccacttttgaattcttcttagctacatgacatgcaactcatagtgtgcaacacacatctaccagtagttgaaccttatgc 6723985  T
Q  301 ttttcttcatctctgccctatttaatttctcc 332  Q
    ||||||||||||||| ||||||||||||||||    
T  6723984 ttttcttcatctctgtcctatttaatttctcc 6723953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 22334260 - 22334221
Alignment:
Q  88 tttctaacaaattccgctaattaccaagttgaatgacaat 127  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  22334260 tttctaataaattcagctaattaccaagttgaatgacaat 22334221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 11467010 - 11466937
Alignment:
Q  89 ttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattactt 162  Q
    |||||| |||||| ||||||| | |||||||||||||||||   | ||||| ||||| |||||| |||||||||    
T  11467010 ttctaataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattactt 11466937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 4995945 - 4995902
Alignment:
Q  134 agagacgataacttactaccttattacttgtgtacgatttggtgt 178  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  4995945 agagacgataacttactactttattacttg-gtatgatttggtgt 4995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 18179240 - 18179410
Alignment:
Q  1 tacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaatt 100  Q
    ||||||| |||||||||||  |||||||||||||| ||  |||||||||||||| |||||||||||||||| |||||||||| ||||||||||| |||||    
T  18179240 tacttctgaatcacaacaacttaatctcgcattgggaaa-acaattaaaatcctgcaaaccacttcatctc-ttttaattct-tttatttctaataaatt 18179336  T
Q  101 ccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 174  Q
    | |||| ||||||||||||| || ||| |  || || || |||||||||||| ||||||||||| || ||||||    
T  18179337 ctgctatttaccaagttgaaagataatgcatatggatacaataacttactactttattacttgtttatgatttg 18179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 20101000 - 20101070
Alignment:
Q  104 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 174  Q
    |||| |||||||||||| ||||||||| || ||||| |||||||||||| |||||||||| ||| ||||||    
T  20101000 ctaactaccaagttgaacgacaatccttatggagactataacttactactttattacttgagtatgatttg 20101070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 7741362 - 7741250
Alignment:
Q  2 acttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattc 101  Q
    |||||| |||||||||| | |||| |||||||||  |  |||||||||||| |  |||||||||||||| ||||| | | |  |||||||||| ||||||    
T  7741362 acttctgaatcacaacatactaatttcgcattgggcaagacaattaaaatcttgtaaaccacttcatctgttttttaattttgttatttctaataaattc 7741263  T
Q  102 cgctaattaccaa 114  Q
    ||| |||||||||    
T  7741262 cgccaattaccaa 7741250  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 30791606 - 30791690
Alignment:
Q  43 aattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatc 128  Q
    |||||||| ||| ||||||||||||||| || | || ||| |||||||| || ||||||||||||||| ||| ||||| |||||||    
T  30791606 aattaaaaccctgcaaaccacttcatcttttctaaaatct-tttatttcaaataaattccgctaattatcaatttgaacgacaatc 30791690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 16072261 - 16072329
Alignment:
Q  105 taattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgattt 173  Q
    ||||||||||||||| ||||||||||  | ||||| || ||||||||| || ||||||| |||||||||    
T  16072261 taattaccaagttgactgacaatccttgtggagacaattacttactactttcttacttgagtacgattt 16072329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 19571017 - 19571090
Alignment:
Q  105 taattaccaagttgaatgacaatcctgatagag-acgat-aacttactaccttattacttgtgtacgatttggtg 177  Q
    ||||||| ||||||||||||||||||  ||||| ||||| |||||||||| |||||| |||| ||||||||||||    
T  19571017 taattactaagttgaatgacaatccttgtagagaacgataaacttactactttattatttgt-tacgatttggtg 19571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 20695926 - 20695991
Alignment:
Q  96 aaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattact 161  Q
    |||||||  |||||||| ||||||| ||||||||   | |||||||||||||||||| ||||||||    
T  20695926 aaattcctataattaccgagttgaacgacaatccctgtggagacgataacttactactttattact 20695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 6887225 - 6887069
Alignment:
Q  11 tcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaatta 110  Q
    |||||||||  ||||||||||||||  || ||||||||||||||||||||| |||||||||||||           |||||||| |||||||||||||||    
T  6887225 tcacaacaatctaatctcgcattgggcaggacaattaaaatcctacaaacc-cttcatctctttt-----------atttctaataaattccgctaatta 6887138  T
Q  111 ccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgtc 179  Q
    |||||||||| |||||||||  | |||||||||||||||||  ||| |||||| ||| |||||||||||    
T  6887137 ccaagttgaacgacaatccttgtggagacgataacttactaatttaatacttgggtatgatttggtgtc 6887069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 8541759 - 8541825
Alignment:
Q  9 aatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttt 75  Q
    |||||||||||  ||||||||||||||  || | |||||||||||| ||||||||||||||||||||    
T  8541759 aatcacaacaacctaatctcgcattgggcagaataattaaaatcctgcaaaccacttcatctctttt 8541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 13529026 - 13528979
Alignment:
Q  115 gttgaatgacaatcctgatagagacgataacttactaccttattactt 162  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13529026 gttgaatgacaatccatatggagacgataacttactactttattactt 13528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 13618565 - 13618518
Alignment:
Q  115 gttgaatgacaatcctgatagagacgataacttactaccttattactt 162  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13618565 gttgaatgacaatccatatggagacgataacttactactttattactt 13618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 35134551 - 35134469
Alignment:
Q  82 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 164  Q
    |||||| |||||| |||||  ||||||||||||||| || ||||||||| || |||||  ||||| ||||  |||||||||||    
T  35134551 tatttacttctaataaattttgctaattaccaagttaaacgacaatccttatggagacagtaactcactattttattacttgt 35134469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 21048325 - 21048442
Alignment:
Q  58 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 157  Q
    |||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||  ||||||||  |  ||||||||||||||    ||||    
T  21048325 aaccacttcatctcttta-aattct-tttatttctaataaattccgctaattaccaagttgaacaacaatccttgtgaagacgataacttacctttttat 21048422  T
Q  158 tacttgtgtacgatttggtg 177  Q
    || ||| |||||||||||||    
T  21048423 tatttgcgtacgatttggtg 21048442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 18778301 - 18778375
Alignment:
Q  104 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgt 178  Q
    |||||||| |||||||| ||||||||  || || ||||||||||||||| |||||||||| |||| |||||||||    
T  18778301 ctaattacaaagttgaacgacaatccacatggaaacgataacttactactttattacttgagtacaatttggtgt 18778375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 33520125 - 33520256
Alignment:
Q  42 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 141  Q
    ||||||||| |||  |||||| |||||||||||| ||||| |||||||| ||| ||||||| ||| ||| | ||||||| ||||||  | ||  |||  |    
T  33520125 caattaaaaccctgtaaaccatttcatctcttttaaattc-atttatttataataaattccactatttatcgagttgaacgacaatttttatgaagagaa 33520223  T
Q  142 taacttactaccttattacttgtgtacgatttg 174  Q
    ||||||||||| ||| ||||||| |||||||||    
T  33520224 taacttactactttactacttgtctacgatttg 33520256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 8926417 - 8926482
Alignment:
Q  109 taccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 174  Q
    |||||||||||| ||||||||  || ||||||||||||| |||| |||||||||| ||| ||||||    
T  8926417 taccaagttgaacgacaatccctatggagacgataacttgctactttattacttgagtatgatttg 8926482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 42498738 - 42498807
Alignment:
Q  96 aaattccgctaattaccaagttgaatgacaatcctgatagagacga-taacttactaccttattacttgt 164  Q
    ||||||||||||||||||||||||| ||||||||| ||| | || | | ||||||||| |||||||||||    
T  42498738 aaattccgctaattaccaagttgaacgacaatccttataaaaacaattcacttactacattattacttgt 42498807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 9575847 - 9575912
Alignment:
Q  88 tttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactacc 153  Q
    ||||||| | ||||||||||||| ||||||||| |||||||   |||||||||| || ||||||||    
T  9575847 tttctaatatattccgctaattatcaagttgaacgacaatctctatagagacgacaatttactacc 9575912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 31275245 - 31275338
Alignment:
Q  84 tttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 177  Q
    ||||||||||| || |||  ||| ||||||||| |||  |||||||| || |||||||||||||||||| ||||||||||| ||||||||||||    
T  31275245 tttatttctaataagttcttctatttaccaagtggaacaacaatccttatggagacgataacttactactttattacttgtttacgatttggtg 31275338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 25461225 - 25461289
Alignment:
Q  110 accaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 174  Q
    ||||||||||| ||||||||   | |||||||||||||||||| ||||||||||||||| |||||    
T  25461225 accaagttgaacgacaatccatttggagacgataacttactactttattacttgtgtacaatttg 25461289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 19004628 - 19004576
Alignment:
Q  112 caagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 164  Q
    ||||||||| ||||||||  ||||||||||||||||||||| |||||| ||||    
T  19004628 caagttgaacgacaatccatatagagacgataacttactactttattatttgt 19004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 21847415 - 21847297
Alignment:
Q  58 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcc-tgatagagacgataacttactacctta 156  Q
    |||||||| |||||||||  ||| | || |||||||| |||| || |||||||| ||||||||||||||||| ||| ||| |||||| |||| ||| |||    
T  21847415 aaccactttatctctttt--attattttgatttctaataaatcccactaattactaagttgaatgacaatccatga-agatacgatagcttagtacttta 21847319  T
Q  157 -ttacttgtgtacgatttggtg 177  Q
     |||||| | ||||||||||||    
T  21847318 gttacttatttacgatttggtg 21847297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 13589906 - 13589955
Alignment:
Q  214 tagctgaccacttttgaattcttcttagctacatgacatgcaactcatag 263  Q
    ||||||||||||||||||| |||||||| | |  ||||||||||||||||    
T  13589906 tagctgaccacttttgaatccttcttagatgcgcgacatgcaactcatag 13589955  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 28411527 - 28411614
Alignment:
Q  41 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcct 130  Q
    ||||||||||  ||||||||||||||||||||||| |||| | || |||||||| ||||||||||||||| | ||||||||| |||||||    
T  28411527 acaattaaaacactacaaaccacttcatctctttt-aattttgtt-atttctaataaattccgctaattaacgagttgaatggcaatcct 28411614  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 23420602 - 23420498
Alignment:
Q  70 tctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacg 169  Q
    ||||||| ||||||||   |||||| |||||| | ||||| | |||||||| |||||||||  | |||||||||||||||||| ||||||||||| ||||    
T  23420602 tctttttcattctattcgcttctaataaattc-gttaattgctaagttgaacgacaatccttgtggagacgataacttactactttattacttgt-tacg 23420505  T
Q  170 atttggt 176  Q
    |||||||    
T  23420504 atttggt 23420498  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 23506766 - 23506837
Alignment:
Q  88 tttctaacaaattccgctaattaccaagttgaatgacaatc-ctgatagagacgataacttactaccttatta 159  Q
    ||||||| |||||| |||||||||||||||||| |||| || ||| |||||||||||||||||||| ||||||    
T  23506766 tttctaataaattctgctaattaccaagttgaacgacattcactg-tagagacgataacttactactttatta 23506837  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 33175600 - 33175505
Alignment:
Q  82 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 177  Q
    |||||| |||||| ||||||| |||||| | |||||||| |||||||    | |||| ||||||||||||  ||||||||||| || |||||||||    
T  33175600 tatttacttctaataaattcctctaattgctaagttgaacgacaatctatgtggagaagataacttactattttattacttgtttatgatttggtg 33175505  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 12960423 - 12960292
Alignment:
Q  24 atctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatga 123  Q
    |||||||||||| ||| |||||||||||||||||     ||| |||||||||  ||| | |||| || ||| ||||| | ||||||||||||||||| ||    
T  12960423 atctcgcattgggaaggacaattaaaatcctaca-----ctttatctctttt--attttttttacttttaagaaatttctctaattaccaagttgaacga 12960331  T
Q  124 caatcctgatagagacgataacttactaccttattactt 162  Q
    ||||| | || |||||| |||||||  || |||||||||    
T  12960330 caatctttatggagacggtaacttatgactttattactt 12960292  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 21604793 - 21604662
Alignment:
Q  41 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacg 140  Q
    ||||||||| |||| |||| ||||||||||| ||||||||||| |||||| ||  ||||||||||||||| | ||||||  ||||||| |  |  ||| |    
T  21604793 acaattaaattcctgcaaatcacttcatctc-ttttaattcta-ttatttatagtaaattccgctaattatctagttgagcgacaatctttgtgtagatg 21604696  T
Q  141 ataacttactaccttattacttgtgtacgatttg 174  Q
    ||| |||||||| |||||| ||| ||| ||||||    
T  21604695 atagcttactactttattatttgcgtaagatttg 21604662  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 26498851 - 26498765
Alignment:
Q  41 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcc 129  Q
    |||||||||| || |||||| ||||| ||| || | ||||||  ||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  26498851 acaattaaaacccaacaaacaacttcgtcttttataaattct--ttacttctaataaattcctctaattaccaagttgaacgacaatcc 26498765  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 12967060 - 12966952
Alignment:
Q  42 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 141  Q
    ||||||||| |  |||||||||||||||| || | |||||| |  | |||||| |||| |||| ||||||| |||||||||| |||||  |  |||||||    
T  12967060 caattaaaacctcacaaaccacttcatcttttctaaattctct--acttctaataaatgccgccaattaccgagttgaatgataatccctacggagacga 12966963  T
Q  142 taacttactac 152  Q
    |||||||||||    
T  12966962 taacttactac 12966952  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 12969246 - 12969138
Alignment:
Q  42 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 141  Q
    ||||||||| |  |||||||||||||||| || | |||||| |  | |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||    
T  12969246 caattaaaacctcacaaaccacttcatcttttctaaattctct--acttctaataaattccgccaattaccgagttgaatgataatccctacggagacga 12969149  T
Q  142 taacttactac 152  Q
    ||||| |||||    
T  12969148 taactgactac 12969138  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 12971432 - 12971324
Alignment:
Q  42 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 141  Q
    ||||||||| |  |||||||||||||||| || | |||||| |  | |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||    
T  12971432 caattaaaacctcacaaaccacttcatcttttctaaattctct--acttctaataaattccgccaattaccgagttgaatgataatccctacggagacga 12971335  T
Q  142 taacttactac 152  Q
    ||||| |||||    
T  12971334 taactgactac 12971324  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 16440501 - 16440618
Alignment:
Q  58 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 157  Q
    ||||| || |||||||||  ||| |||||| || ||| |||||||||||||| |  |||||||  || |||||  ||||| |||||||||||||| || |    
T  16440501 aaccagtttatctctttt--attttatttacttataataaattccgctaattgcttagttgaacaacgatccttgtagaggcgataacttactacttttt 16440598  T
Q  158 tacttgtgtacgatttggtg 177  Q
    ||| | |||| |||||||||    
T  16440599 tacctatgtatgatttggtg 16440618  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 23072552 - 23072516
Alignment:
Q  274 acatctaccagtagttgaaccttatgcttttcttcat 310  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  23072552 acatgtaccagtagttgatccttatgcttttcttcat 23072516  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 7779507 - 7779421
Alignment:
Q  91 ctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 177  Q
    |||| |||||| |||| |||||| |||||||||||||||| || ||||| ||||||||| | |||| ||||||  || |||||||||    
T  7779507 ctaataaattctgctatttaccatgttgaatgacaatccttatggagactataacttacaagcttactacttgattatgatttggtg 7779421  T

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