View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19926_low_1 (Length: 446)
Name: NF19926_low_1
Description: NF19926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19926_low_1 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 9836545 - 9836126
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9836545 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
9836446 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9836445 |
agtggattcagagtatcctagaacattgaaccttgttcaaagactaaatatctccattgatattgcttctgcattacattatcttcattgtgaatgtgag |
9836346 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9836345 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
9836246 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtatattatgaattcttgagtcatttaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9836245 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtatattatgaattctcgagtcatttaa |
9836146 |
T |
|
| Q |
416 |
tgttccttgaattctcctat |
435 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9836145 |
tgttccttgaattctcctat |
9836126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 10588647 - 10588273
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
10588647 |
catgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaagtttagaacaatggcttcatccatggaa |
10588548 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
||| |||||||| ||| ||||| ||| |||||||||| |||||||||||| || ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10588547 |
tgtgaattcagagcatccaagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgag |
10588448 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| ||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
10588447 |
caggtggtccttcattgtgatataaagccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag |
10588348 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggta |
390 |
Q |
| |
|
||||| | || |||||| ||||||||||||||| | ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
10588347 |
ttattgaagacacatctcatcaggaaactagtacaattggaattaaagggactgttggctatgctcctccaggta |
10588273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 10763350 - 10762973
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| | || ||| |
|
|
| T |
10763350 |
catgttgttctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgcaccctaggaa |
10763251 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || ||||| ||| | ||||||| | |||| ||||||| | |||||| |||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
10763250 |
tttaaatgcagagactccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgag |
10763151 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| ||||| ||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| | || |
|
|
| T |
10763150 |
caattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggaatagcaagactagttcaag |
10763051 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtatat |
393 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| |||| ||| || ||||||||||||| |||||||||| |
|
|
| T |
10763050 |
ccattgcttgtacctctcttaaggaaactagtacaactggaataaaaggaactgttggctatgctcctccaggtatat |
10762973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 7192997 - 7193372
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||| | | |
|
|
| T |
7192997 |
catgttgttccagtacagattacaaaggtcaagaatttaaagctttagtctttgaatacatgaacaacggaagcttagaacaatggctacatcctagatc |
7193096 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|||| || |||| || ||||| ||| |||||| ||||||||| |||||| |||||||||| | || ||||||||| |||||| |||||||||| |
|
|
| T |
7193097 |
agtgaatgtagagaatcaaagaacgttggaccttgatcaaagattgaatatcgctgttgatattgcctttgtattacattaccttcatcttgaatgtgag |
7193196 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| | |||||||||||||| | ||||||||||| ||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
7193197 |
caatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag |
7193296 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtat |
391 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| | ||| |||||| |||||||||||||| |||||||| |
|
|
| T |
7193297 |
ttattgacgacacctctcatcgagaaactagtacaattggaattaaagggactattggctatgctcctccaggtat |
7193372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 10740916 - 10740539
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| ||||| |||||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
10740916 |
catgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagat |
10740817 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || |||| ||| ||||||||| |||||| ||| |||||||| ||| | ||| | || ||||||||||||||||||| |||||||| |
|
|
| T |
10740816 |
tttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaagaatgtgaa |
10740717 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| ||||| ||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
10740716 |
caattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag |
10740617 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtatat |
393 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| | |||| ||| || ||||||||||||| |||||||||| |
|
|
| T |
10740616 |
ccattgacgatacctctcacaaggaaactagtacaattggaataaaaggaactgttggctatgctcctccaggtatat |
10740539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 10604744 - 10605064
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
10604744 |
catgttgttctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcctgagat |
10604843 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || ||||| ||| | ||| ||| |||||| | ||||||| || ||| ||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
10604844 |
tttaaatgcagagcctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgag |
10604943 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| | ||||||||||||||| | ||||||||||| |||| || |||||| | ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
10604944 |
caattagtcattcattgtgatctaaagccaagcaatgtcctacttgatgatgatatggttgctcatgtgagtgattttggcatagcaagactggtctcgt |
10605043 |
T |
|
| Q |
316 |
ccattgacggtacctctcata |
336 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
10605044 |
ccattggtggtacctctcata |
10605064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 10652419 - 10652045
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
|||||||||| |||| ||||| |||||| ||| ||||| |||||||| ||||| |||||||| || |||| | ||||||||||||| |||| | | |
|
|
| T |
10652419 |
catgttgttcgagtaccgattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaacggaaacctagaacaatggctacatccaggtat |
10652320 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || || ||| | || |||| ||| |||||| |||| || | |||||| |||| |||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
10652319 |
aatgaatgcagggattcaaagaatgttggaccttgatcaacgactgaatatcattgttgacattgcttctgtattacattaccttcatcatgaatgtgag |
10652220 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| || ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
10652219 |
caagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag |
10652120 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggta |
390 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||||| | ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
10652119 |
ccattgacaatacctctaacaaggaaactagtacaattggaattaaagggactgttggctatgctcctccaggta |
10652045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 10611702 - 10612077
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
10611702 |
catgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcccaaggt |
10611801 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || |||| | | ||||||| |||| ||| |||||||| ||| || ||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
10611802 |
tttaaatgaagagcatacagcaacattggacctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataatgaatgtgag |
10611901 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||| |||| || |||||| | |||||||| || ||||||||||||||||||||||||||| |||| | |
|
|
| T |
10611902 |
caattggtccttcattgtgatataaagccaagcaatgtcctacttgatgatgatatggttgcacatgtgagtgattttggcatagcaagacttgtctcgg |
10612001 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtat |
391 |
Q |
| |
|
|||||| ||| ||||||||||| | |||| |||| | ||| |||||| ||||||||||||| |||||||| |
|
|
| T |
10612002 |
ccattggtggttcctctcataagaatactaagacaattggaattaaagggactgttggctatgctcctccaggtat |
10612077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 19606080 - 19605790
Alignment:
| Q |
18 |
tgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacag |
117 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
19606080 |
tgttgttctagtattgataacaaaggtctagaattcaaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatcccgggacaa |
19605981 |
T |
|
| Q |
118 |
tggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagca |
217 |
Q |
| |
|
|| || |||| ||| ||||||||||| ||| ||||||||||||||| | ||| || |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
19605980 |
tgaatgcagatcatccaagaacattgaagtttgagcaaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagca |
19605881 |
T |
|
| Q |
218 |
agtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagactt |
308 |
Q |
| |
|
| ||||| ||||||||||| | ||||||||||| ||||| | || || | || ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
19605880 |
attggtccttcattgtgatctaaagccaagcaatgtccttattgacgacgatatcgttgcacatgtgagtgattttggcatagcaagactt |
19605790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 10660302 - 10659927
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
|||||||||| |||| ||||| |||||| ||| ||||| |||||||| ||||| |||||||| ||||||||| ||||||||||||| |||| | | |
|
|
| T |
10660302 |
catgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatccaggtat |
10660203 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || || ||| | || ||| ||| |||||| |||| || | |||||| |||| |||||| || ||||||||| |||||| ||||||||| |
|
|
| T |
10660202 |
aatgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatgtgag |
10660103 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| || ||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
10660102 |
caagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag |
10660003 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtat |
391 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||| | ||| |||||| ||||||||||||| |||||||| |
|
|
| T |
10660002 |
ccattgacgatacctctcacaaggaatttagtacaattggaattaaagggactgttggctatgctcctccaggtat |
10659927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 10558896 - 10559269
Alignment:
| Q |
18 |
tgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacag |
117 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||| |||||||||| |||||||||||||||||||||||| | ||| | || | ||| |
|
|
| T |
10558896 |
tgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaaactggttgcattcaaggatga |
10558995 |
T |
|
| Q |
118 |
tggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagca |
217 |
Q |
| |
|
|| || |||| || ||| ||||| | ||| ||||||| | |||||| |||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10558996 |
tgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagca |
10559095 |
T |
|
| Q |
218 |
agtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagcc |
317 |
Q |
| |
|
| ||||| ||||||||||| | ||||||||||| ||||| | ||||| ||| |||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
10559096 |
attggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggcatagcaagactcgtctcatct |
10559195 |
T |
|
| Q |
318 |
attgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtat |
391 |
Q |
| |
|
||||||| |||| |||||||||||| |||| | |||| |||||| ||||||||||||| |||||||| |
|
|
| T |
10559196 |
gcggacggtatatctcctaaggaaactagcacaattggaataaaagggactgttggctatgctcctccaggtat |
10559269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 10216966 - 10216648
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| | || |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
10216966 |
catgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctgagat |
10216867 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| |||||||| ||| | ||||||| |||||| ||| || ||||| ||| || ||| ||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
10216866 |
tttaaattcagagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgag |
10216767 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| || | |||||||||||| | ||||||||||| | ||||| ||||| ||||||||||||| |||||||||||||||||||||| | || ||||| |
|
|
| T |
10216766 |
caattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagcaacatttgtctcaa |
10216667 |
T |
|
| Q |
316 |
ccattgacggtacctctca |
334 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
10216666 |
ccattggtggtacctctca |
10216648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 10580996 - 10581354
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
10580996 |
catgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctcagat |
10581095 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| | |||| || | |||||||||||||| ||| |||||||| ||| || ||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
10581096 |
ttaag-tgcagaacctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattacattatcttcatcgagaatgtgag |
10581194 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| ||||| ||| ||||||| | |||||||||| || ||||| |||||| ||||||| || |||||||||||||||| |||||||||| |||||| |
|
|
| T |
10581195 |
caattggtccttcgttgtgatctaaagccaagca-ca--cttcttgatgatgacatggt----catgtgagtgattttggcacagcaagacttgtctcag |
10581287 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcc |
382 |
Q |
| |
|
||||| |||||| |||||||| | |||||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
10581288 |
ccatttgtggtaccactcataagaatactagtacaactggaataaaaggaacaattggctatgctcc |
10581354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 337
Target Start/End: Original strand, 10565181 - 10565340
Alignment:
| Q |
178 |
ttgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgc |
277 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| || ||||||||||||||||| | ||||||||||| |||||||| || ||| |||||||||| |
|
|
| T |
10565181 |
ttgcttctgcattacattatcttcatagagaatgtgaagaattggtcattcattgtgatctaaagccaagcaatatccttcttgacgatgacatggttgc |
10565280 |
T |
|
| Q |
278 |
tcacgtgagtgattttggcatagcaagacttatctcagccattgacggtacctctcataa |
337 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |||| | |||||||| |||| |
|
|
| T |
10565281 |
tcatgtgagtgattttggcatagcaagactcgtctcagctattggcagtacctcttataa |
10565340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 10717157 - 10716782
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||||| ||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
10717157 |
catgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagat |
10717058 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
| || |||| ||| ||||||||| |||||| ||| |||||||| ||| || ||| | || ||||||||||||||||||| |||||||| |
|
|
| T |
10717057 |
tttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaagaatgtgaa |
10716958 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| | |||||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||| |||| | |
|
|
| T |
10716957 |
caattaatcattcattgtgatcttaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcgg |
10716858 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaactacaatatcagggaccattggctatgctcccccaggtat |
391 |
Q |
| |
|
|||| | ||||||| ||||||| || |||||| | |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10716857 |
atattggcattacctctgataaggataccagtacagttggaataaaagggagcattggctatgctcccccaggtat |
10716782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 11048872 - 11048572
Alignment:
| Q |
18 |
tgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacag |
117 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
11048872 |
tgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattt |
11048773 |
T |
|
| Q |
118 |
tggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagca |
217 |
Q |
| |
|
| |||||||| ||| | ||||||| |||||| | | || ||||| ||| || ||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
11048772 |
taaattcagagcatccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagca |
11048673 |
T |
|
| Q |
218 |
agtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagcc |
317 |
Q |
| |
|
| || | |||||||||||| | |||||||| || | ||||| | || ||||||||||||| ||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
11048672 |
attgattattcattgtgatctaaagccaagtaatgttcttcttaacgacgacatggttgctcatgtgagtgattttggcattgcaaaacttgtctcagcc |
11048573 |
T |
|
| Q |
318 |
a |
318 |
Q |
| |
|
| |
|
|
| T |
11048572 |
a |
11048572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 10747230 - 10746930
Alignment:
| Q |
18 |
tgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacag |
117 |
Q |
| |
|
|||||||||||||| ||||| |||| | || ||||||||| |||||||| ||||||| |||||||||||||||||||||||| | |||| | |
|
|
| T |
10747230 |
tgttgttctagtatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaagcttagaacaatggttgcatcctgagtttt |
10747131 |
T |
|
| Q |
118 |
tggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagca |
217 |
Q |
| |
|
| || |||| ||| | ||| || |||||| || |||||||| ||| || ||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
10747130 |
taaatgaagagcatccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagca |
10747031 |
T |
|
| Q |
218 |
agtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagcc |
317 |
Q |
| |
|
| | |||||||| |||||| ||||||||||||| ||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
10747030 |
attagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagcc |
10746931 |
T |
|
| Q |
318 |
a |
318 |
Q |
| |
|
| |
|
|
| T |
10746930 |
a |
10746930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 10565021 - 10565104
Alignment:
| Q |
18 |
tgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatgg |
101 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||||||||||| | |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
10565021 |
tgttgttcaagtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatgg |
10565104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 9825092 - 9825261
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatgg-aagcttagaacaatggctttatccctgga |
114 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| |||||| |||||| |||||||||| |||||| ||||||| |||||||||||||||| | |||| ||| |
|
|
| T |
9825092 |
catgtttttctagtatcgattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagcttagaacaatggttgaatccaagga |
9825191 |
T |
|
| Q |
115 |
cagtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttc |
184 |
Q |
| |
|
|| | || |||| ||||||||||||| | |||| ||||||||| |||||| |||||| ||||||| |
|
|
| T |
9825192 |
tagagaatgtagagcatcctagaacattggatcttgatcaaagattgaatatcattattgatgttgcttc |
9825261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 9825258 - 9825374
Alignment:
| Q |
198 |
cttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggca |
297 |
Q |
| |
|
|||||| |||| ||||||||| | || ||||||||||||| |||||||| || |||||| | ||||| | || ||| |||| | |||||||||||||| |
|
|
| T |
9825258 |
cttcatcgtgattgtgagcaattaatccttcattgtgatataaagccaagtaatatccttgttgatgaagatattgtttctcaggcgagtgattttggca |
9825357 |
T |
|
| Q |
298 |
tagcaagacttatctca |
314 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
9825358 |
ttgcaagacttgtctca |
9825374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 9850879 - 9850829
Alignment:
| Q |
54 |
aaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctt |
104 |
Q |
| |
|
|||||| |||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
9850879 |
aaagctctagttttttagtacatgataaatggaagcttagaacaatggctt |
9850829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 12899562 - 12899897
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
12899562 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacaatggttacatcccgagac |
12899661 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|| || || | ||| | |||||||||||||| ||| |||||||| ||| ||| ||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
12899662 |
tttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgag |
12899761 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| | ||| ||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12899762 |
caattagtctttcattgtgatataaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa |
12899861 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaa |
351 |
Q |
| |
|
| ||| ||||||||||||||| | ||||| |||| |
|
|
| T |
12899862 |
caatttctggtacctctcataagaatactagcacaa |
12899897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 12948667 - 12948971
Alignment:
| Q |
47 |
agaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacagtggattcagagtgtcctagaacattgaac |
146 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| | |||| ||| || || || | ||| | |||||||||| |
|
|
| T |
12948667 |
agaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaac |
12948766 |
T |
|
| Q |
147 |
cttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaa |
246 |
Q |
| |
|
||| || |||||||| ||| || ||| |||||||||||||||||||||||||| | ||||||||||| | ||| ||||||||||| | || |||| |
|
|
| T |
12948767 |
cttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagtccttcattgtgatctaaaaccaa |
12948866 |
T |
|
| Q |
247 |
gcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagccattgacggtacctctcataaggaaactag |
346 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||||| | ||||| |
|
|
| T |
12948867 |
gcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttccagtacctctaataagaatactag |
12948966 |
T |
|
| Q |
347 |
tacaa |
351 |
Q |
| |
|
||||| |
|
|
| T |
12948967 |
tacaa |
12948971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 12932271 - 12932606
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||| | |||| ||| |
|
|
| T |
12932271 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagac |
12932370 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|| || || | ||| | |||||||||||||| ||| |||||||| ||| ||| ||| ||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
12932371 |
tttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgag |
12932470 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|| | || ||||||||||| | || |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12932471 |
cagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa |
12932570 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtacaa |
351 |
Q |
| |
|
||||| |||||||||| ||||| | ||||| |||| |
|
|
| T |
12932571 |
ccatttccggtacctctaataagaatactagcacaa |
12932606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 12907182 - 12907504
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| | |||| || |
|
|
| T |
12907182 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgaaac |
12907281 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|| || || | ||| | |||||||||||||| || |||||||| ||| ||| ||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
12907282 |
tttgaatgcaaatcctccaacaacattgaaccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgag |
12907381 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|| | || | ||||||||| | || |||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
12907382 |
cagttaatcctccattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatttgagtgattttggcatagcaagacttgtctcaa |
12907481 |
T |
|
| Q |
316 |
ccattgacggtacctctcataag |
338 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
12907482 |
ccatttctggtacctctcataag |
12907504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 12958070 - 12958405
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||| | |||| | |
|
|
| T |
12958070 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttacatcctcaaat |
12958169 |
T |
|
| Q |
116 |
agtggattcagagtg-tcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtga |
214 |
Q |
| |
|
|| || | |||| ||| | |||||||||||||| ||| |||||||| ||| ||| ||| |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
12958170 |
tttgaatgc-gagtcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtga |
12958268 |
T |
|
| Q |
215 |
gcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctca |
314 |
Q |
| |
|
||| | || |||| |||||| | ||||||||||| ||||||| |||| | ||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
12958269 |
gcagttaatccttcactgtgatctaaagccaagcaatgtccttcttgatggtgacatggttgctcatgtgagtgattttggaatagcaagacttgtctca |
12958368 |
T |
|
| Q |
315 |
gccattgacggtacctctcataaggaaactagtacaa |
351 |
Q |
| |
|
||||| |||||||||| ||||| | ||||| |||| |
|
|
| T |
12958369 |
accatttccggtacctctaataagaatactagcacaa |
12958405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 17923620 - 17923287
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| | |||| ||| |
|
|
| T |
17923620 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagac |
17923521 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|| || || | ||| | |||||||||||||| ||| |||||||| ||| ||| ||| ||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
17923520 |
tttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgag |
17923421 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
|| | || ||||||||||| | || |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
17923420 |
cagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa |
17923321 |
T |
|
| Q |
316 |
ccattgacggtacctctcataaggaaactagtac |
349 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||| |
|
|
| T |
17923320 |
ccatttccggtacctctaataagaatactagtac |
17923287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 7285 - 7589
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggac |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| | |||| ||| |
|
|
| T |
7285 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagac |
7384 |
T |
|
| Q |
116 |
agtggattcagagtgtcctagaacattgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgag |
215 |
Q |
| |
|
|| || || | ||| | |||||||||||||| ||| |||||||| ||| ||| ||| ||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
7385 |
tttgaatgcaaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattaacttcatcgagaatgtgag |
7484 |
T |
|
| Q |
216 |
caagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcag |
315 |
Q |
| |
|
||| | | ||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
7485 |
caattaatacttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa |
7584 |
T |
|
| Q |
316 |
ccatt |
320 |
Q |
| |
|
||||| |
|
|
| T |
7585 |
ccatt |
7589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 303
Target Start/End: Complemental strand, 31467217 - 31467092
Alignment:
| Q |
178 |
ttgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgc |
277 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||| | ||||| |||||| | ||||| |||||| ||||| || |
|
|
| T |
31467217 |
ttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttcttgatgattctatggtagc |
31467118 |
T |
|
| Q |
278 |
tcacgtgagtgattttggcatagcaa |
303 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
31467117 |
tcatgtgagtgattttggcatagcaa |
31467092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 31467348 - 31467300
Alignment:
| Q |
47 |
agaatttaaagctttagtttttgattacatgaaaaatggaagcttagaa |
95 |
Q |
| |
|
||||||||||||| | ||||| || ||||||||||| |||||||||||| |
|
|
| T |
31467348 |
agaatttaaagctcttgttttcgagtacatgaaaaacggaagcttagaa |
31467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 308
Target Start/End: Original strand, 28605740 - 28605907
Alignment:
| Q |
141 |
ttgaaccttgttcaaagattaaatatctgcattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatca |
240 |
Q |
| |
|
||||||||| | |||||||||||||| || ||| ||||||||||| | || ||||| || | ||||| |||||| |||||||||||||| | | |
|
|
| T |
28605740 |
ttgaaccttctccaaagattaaatattctcacagatgttgcttctgcaatgcactatctacactttgaatctgagcatccaatcattcattgtgatttaa |
28605839 |
T |
|
| Q |
241 |
agccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagactt |
308 |
Q |
| |
|
|||||||||| || ||||| || || ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
28605840 |
agccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttggacaagcaagactt |
28605907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 28605618 - 28605705
Alignment:
| Q |
16 |
catgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggct |
103 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| ||||| ||||||||||||||||| |||||| |||||||||| ||||| ||||||| |
|
|
| T |
28605618 |
catgttgttcaagtatggattacaatggtaatgaattcaaagctttagtttttgagtacatggaaaatggaagtttagataaatggct |
28605705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 39875899 - 39875817
Alignment:
| Q |
226 |
ttcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagactt |
308 |
Q |
| |
|
||||||||||| | || |||||||| ||||||| || ||| ||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
39875899 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagactt |
39875817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 39884022 - 39883940
Alignment:
| Q |
226 |
ttcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagactt |
308 |
Q |
| |
|
||||||||||| | || |||||||| ||||||| || ||| ||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
39884022 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagactt |
39883940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 39890976 - 39890894
Alignment:
| Q |
226 |
ttcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagactt |
308 |
Q |
| |
|
||||||||||| | || |||||||| ||||||| || ||| ||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
39890976 |
ttcattgtgatttaaaaccaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggcttagccagactt |
39890894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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