View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19926_low_2 (Length: 433)
Name: NF19926_low_2
Description: NF19926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19926_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 35212795 - 35212381
Alignment:
| Q |
1 |
atgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagctagaaaggcttttgatgaaggaccatggccaaagatgaccccttatgtatg |
100 |
Q |
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| T |
35212795 |
atgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagctagaaaggcttttgatgaaggaccatggccaaagatgaccccttatgtatg |
35212696 |
T |
|
| Q |
101 |
aacttcctctgccttctaattttactctactaaacaaacatttaccaatagtttaatttttcattgttactaatgagaagaatggtagagtccaacctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212695 |
aacttcctctgccttctaattttactctactaaacaaacatttaccaatagtttaaattttcattgttactaatgagaagaatggtagagtccaacctaa |
35212596 |
T |
|
| Q |
201 |
gaggaaaataatttgagagaaatattgattacttggaattgatagaatggcagaaagttgataacaaggagtgtagtgtatactatacacttaatatggt |
300 |
Q |
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| T |
35212595 |
gaggaaaataatttgagagaaatattgattacttggaattgatagaatgacagaaagttgataacaaggagtgtagtgtatactatacacttaatatggt |
35212496 |
T |
|
| Q |
301 |
gatcataactaagttaacaaataattaatactaagttactaaccaaccttttaagttgaaactacctataacaaacttaactaattctaacaaatctcag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212495 |
gatcataactaagttaacaaataattaatactaagttactaaccaacc-tttaagttgaaactacctataacaaacttaactaattctaacaaatctcag |
35212397 |
T |
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| Q |
401 |
actatatcttacagtt |
416 |
Q |
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| T |
35212396 |
actatatcttacagtt |
35212381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 45518813 - 45518887
Alignment:
| Q |
174 |
tgagaagaatggtagagtccaacctaagaggaaaataatttgagagaaatattgattacttggaattgatagaatg |
249 |
Q |
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| T |
45518813 |
tgagaagcatggtatagcccaaca-aagagaaaaataaattgagagaaagattgattatttgaaattgatagaatg |
45518887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 11708318 - 11708361
Alignment:
| Q |
206 |
aaataatttgagagaaatattgattacttggaattgatagaatg |
249 |
Q |
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|||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
11708318 |
aaataaattgagagaaagattgattatttggaattgatagaatg |
11708361 |
T |
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