View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_1 (Length: 824)
Name: NF19927_high_1
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 18 - 809
Target Start/End: Original strand, 7498155 - 7498944
Alignment:
| Q |
18 |
ttgggcaaatgaagacggtactagcacaatcgatatacgtgaaggagatgtaggaagtctcacagaaggatctgttttctatatacacaacaacttggat |
117 |
Q |
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| T |
7498155 |
ttgggcaaatgaagacggtactagcacaatcgatatacgtgaaggagatgtaggaagtctcacagaaggatctgttttctatatacacaacaacttggat |
7498254 |
T |
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| Q |
118 |
gaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagt |
217 |
Q |
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| T |
7498255 |
gaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagt |
7498354 |
T |
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| Q |
218 |
ttcaaagccttgtttgtttgcaattgtttatgtttgaacaaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctt |
317 |
Q |
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| T |
7498355 |
ttcaaagccttgtttgtttgcaattgtttatgtt--aacaaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctt |
7498452 |
T |
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| Q |
318 |
tgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaaacaataaatgtatagttggttccattttgagccaaaattg |
417 |
Q |
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| T |
7498453 |
tgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaaacaatcaatgtatagttggttccattttgaggcaaaattg |
7498552 |
T |
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| Q |
418 |
ttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaactttcaatttcttttgaaggtgcctgaggatttgattgag |
517 |
Q |
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| T |
7498553 |
ttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaactttcaatttcttttgaaggtgccggaggatttgattgag |
7498652 |
T |
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| Q |
518 |
gcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacatagcactgtcttggaattggaggcttcatttcttaaatact |
617 |
Q |
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| T |
7498653 |
gcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacatagcactgtcttggaattggaggcttcatttcttaaatact |
7498752 |
T |
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| Q |
618 |
ttacaggcattgaatacaactccaagaatctgaaaacatacaacatctttgatagtgaccatgacttcgaaaattgttatggttggacctcgacagtcac |
717 |
Q |
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| T |
7498753 |
ttacaggcattgaatacaactccaagaatctgaaaacatacaacatctttgatagtgaccatgacttcgaaaattgttatggttggacctcaacagtcac |
7498852 |
T |
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| Q |
718 |
caaaaagcaactaaaacgattgaagagtaacaacattggatttctcatggtgaatttgaccagggtcagtgaccatatcataatttcattat |
809 |
Q |
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| T |
7498853 |
caaaaagcaactaaaacgattgaagagtaacaacattggatttctcatggtgaatttgaccagggtcagtgaccatatcataatttcattat |
7498944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 24338549 - 24338586
Alignment:
| Q |
423 |
tgattttgacatgtttggatattctcgagtaaaattaa |
460 |
Q |
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| T |
24338549 |
tgattttgacatgtttggatgttctcgagtaaaattaa |
24338586 |
T |
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