View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_102 (Length: 254)
Name: NF19927_high_102
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_102 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 3190766 - 3190662
Alignment:
| Q |
150 |
gaaatgatatttttagtttgagtaatgacagataacaaggaagggtgaaattgaataattattttgtttagcgagtgataggaatgaagttgatcaatat |
249 |
Q |
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| T |
3190766 |
gaaataatatttttagtttgagtaatggcagataacaaggaagggtgaaattgaataattattttgtttagcgagtgataggaatgaagttgatcaatat |
3190667 |
T |
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| Q |
250 |
ataat |
254 |
Q |
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||||| |
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| T |
3190666 |
ataat |
3190662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 3190374 - 3190261
Alignment:
| Q |
39 |
atacgttagagtgttagttgnnnnnnntattgggtaagattaaatatttgtataactaataattgatcaagatgagatccgttaactcatggtaacgtgt |
138 |
Q |
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| T |
3190374 |
atacgttagagtgttagttgaaaaaa-tattgggtaagattaaatatttatataactaataattgattaagatgagatccgttaactcatggtaacgtgt |
3190276 |
T |
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| Q |
139 |
ttgagttttatgaaa |
153 |
Q |
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| T |
3190275 |
ttgagttttatgaaa |
3190261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 3190450 - 3190415
Alignment:
| Q |
4 |
tactgtaattttctttgacgtgagattgttataata |
39 |
Q |
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| T |
3190450 |
tactgtaattttctttgacgtgagattgttataata |
3190415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 20283196 - 20283272
Alignment:
| Q |
66 |
tattgggtaagattaaatatttgtataactaataattgatcaagatgagatccgttaactcatggtaacgtgtttga |
142 |
Q |
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| T |
20283196 |
tattggatacgattaaatacttgtataattaatgactaatcaagatgagatccgtcaactcttggtaatgagtttga |
20283272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 41195072 - 41194996
Alignment:
| Q |
66 |
tattgggtaagattaaatatttgtataactaataattgatcaagatgagatccgttaactcatggtaacgtgtttga |
142 |
Q |
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| T |
41195072 |
tattggatacgattaaatacttatataattaatgactaatcaagatgagatccgtcaactcttggtaatgagtttga |
41194996 |
T |
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