View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_11 (Length: 576)
Name: NF19927_high_11
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 147 - 557
Target Start/End: Complemental strand, 23398426 - 23398012
Alignment:
| Q |
147 |
ctatagtaagcaaccaccaaataacttgtataatattgtttcatggaactgcatacatgtgtacgtttggatcagttgtgagtttgacaaaatcaccatg |
246 |
Q |
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| T |
23398426 |
ctatagtaagcaaccaccaaataacatgtataatattgtttcatggaactgcatacatgtgtacgtttggatcagttgtgagtttgacaaaatcaccatc |
23398327 |
T |
|
| Q |
247 |
acattggtgattctgtcaatctcatcgtaaatctaaacatgtatgaaatattttaaaaatatttctcgtaaaaataaaggtgtagaggagcaaggatctt |
346 |
Q |
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| T |
23398326 |
acattggtgattctgtcaatctcatcgtaaatctaaacatgtatgaaatattttaaaaatatttctcgtaaaaataaaggtgtagaggagcaaggatctt |
23398227 |
T |
|
| Q |
347 |
gtaatagtgttactgccaaaggatgttcagttgcccaaatgatcaagcaagttaatcaacttgcaattatcattggatgattatcatgaatttgtgtctt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23398226 |
gtaatagtgttactgccaaaggatgttcagttgcccaaatgatcaagcaagttaatcaacttgcaattatcattggatgattatcatgaatttgtgtctt |
23398127 |
T |
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| Q |
447 |
catcttc---atcagcaccatcgttaatctcacagctacatgctcttgcttccatccgaatttccatatgaaactttcaatag-aaaaatatagtacaaa |
542 |
Q |
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||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23398126 |
catcttcatcatcagcaacatcgttaatctcacagctgcatgctcttgcttccatccgaatttccatatgaaactttcaatagaaaaaatatagtacaaa |
23398027 |
T |
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| Q |
543 |
agctatgaatagatg |
557 |
Q |
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||||||||||||||| |
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| T |
23398026 |
agctatgaatagatg |
23398012 |
T |
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