View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_127 (Length: 233)
Name: NF19927_high_127
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_127 |
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Alignment Details
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38602365 - 38602434
Alignment:
| Q |
1 |
ataatcaacatattgacaattttgatatctagaatattttaataccaagtacatgcatgagaaccatatatgtgaag |
77 |
Q |
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| T |
38602365 |
ataatcaacatattgacaattttgatatctagaatattttaataccaagt-------tgagaaccatatatgtgaag |
38602434 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 38602520 - 38602581
Alignment:
| Q |
159 |
ctcttccacccttcatttggaa--------gctctaaaacagcctgatcatatacactcaat |
212 |
Q |
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| T |
38602520 |
ctcttccacccttcatttggaaatatcatggctctaaaacagcctgatcatatacactcaat |
38602581 |
T |
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