View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_135 (Length: 221)
Name: NF19927_high_135
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_135 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 19213796 - 19213607
Alignment:
| Q |
16 |
gaagtgtaaatcattgtccaaggtttcattctctgatgataatttaattcagtttgataaaggcgacacaactaaagtgcatttttcgcctaatgttgaa |
115 |
Q |
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| T |
19213796 |
gaagtgtaaatcattgtccaaggtttcattctctgatgataatttaattcagtttgataaaggcgacacgactaaagtgcatttttctcctgatgttgaa |
19213697 |
T |
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| Q |
116 |
gtttctagaccactttctgcatttcaagannnnnnnattaatagcataaacacagaagtggttaaatctgaatcttctcagccttcagct |
205 |
Q |
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| T |
19213696 |
ctttcgagaccactttctgcatttcaagaggaggggattaatagcataaacacagaagtggttaaatctgaatcttctcagccttcagct |
19213607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 7410996 - 7411065
Alignment:
| Q |
16 |
gaagtgtaaatcattgtccaaggtttcattctctgatgataatttaattcagtttgataaaggcgacaca |
85 |
Q |
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| T |
7410996 |
gaagtttaaatcactatccaaggtgtcattttgtgatgataatttaatttggtttgataaaggtgacaca |
7411065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 7410127 - 7410048
Alignment:
| Q |
22 |
taaatcattgtccaaggtttcattctctgatgataatttaattcagtttgataaaggcgacacaactaaagtgcatttttc |
102 |
Q |
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| T |
7410127 |
taaatcattatccaaggtgtcatt-tatgatgataaattaattcaatttgataaaggtgacacacctcaactacatttttc |
7410048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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