View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_18 (Length: 503)
Name: NF19927_high_18
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 125 - 487
Target Start/End: Complemental strand, 38871062 - 38870698
Alignment:
| Q |
125 |
gagattttggtaagagataatataatccagtttggtaataataaacaggaatatcccggtcctttattgtcgtc---ttagcatcacacatagtacatta |
221 |
Q |
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| T |
38871062 |
gagattttggtaagagataatataatccagtttggtaataataaacaggaatattccggtcctttattgtcgtcgtcttagcatcacacatagtacatta |
38870963 |
T |
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| Q |
222 |
ctttgaaattttaatgtcattgtgttctatgacatggtcatgaaatcaccaactctaggtttcttttgggacttctcttgctactccgatgaaaacatga |
321 |
Q |
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| T |
38870962 |
ctttgaaattttaatgtcatcgtgttctatgacatggtcatgaaatcaccaactctaggtttcttttgggacttctcttgctactccgatgaaaacatga |
38870863 |
T |
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| Q |
322 |
cacttatcatcaaaaaggtattagactcctctaatggagtgtactttttgtttttcctagtaagtaaaaaggagggtacttttgactagaggataaaatg |
421 |
Q |
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| T |
38870862 |
cacttatcatcaaaa-ggtattagactcctctaatggagtgtactttttgtttttcatagtaagtaaaaaggagggtacttttgactagaggataaaatg |
38870764 |
T |
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| Q |
422 |
caattacaattgattgagaatatatccattcatataagaattatgacagcaacacacattttttcc |
487 |
Q |
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| T |
38870763 |
caattacaattgattgagaatatatccattgatataagaattatgacagcaacacacattttttcc |
38870698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38871186 - 38871149
Alignment:
| Q |
1 |
catcaatgaagtggagtaaccaaataaaggcgcacact |
38 |
Q |
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| T |
38871186 |
catcaatgaagtggagtaaccaaataaaggcgcacact |
38871149 |
T |
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