View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_24 (Length: 466)
Name: NF19927_high_24
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 151 - 433
Target Start/End: Original strand, 51809307 - 51809580
Alignment:
| Q |
151 |
gaaaagaaataatagataattccataccagtggaatgacttcatgggtgggatgagattgacgagatttgcataacccttgatgagttcatcaatcttct |
250 |
Q |
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| T |
51809307 |
gaaaagaaataatagataattccataccagtggaatgacttcatgggtgggatgagattgacgagatttgcataacccttgatgagttcatcaatcttct |
51809406 |
T |
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| Q |
251 |
cttgagagatttcatccttgaactttgcgatcactatgtgcttcacagccatttctcttttttgtttgctttccacttctcacctgctacttagttagtt |
350 |
Q |
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| T |
51809407 |
cttgagagatttcatccttgaactttgcgatcactatgtgcttcacagccatttctcttttttgtttgctttccacttctcacctgctacttagttagtt |
51809506 |
T |
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| Q |
351 |
accagtcagtactaccactatctcatttttctaggattaggatatttttcttagaacaaaaaatgggttaaatgtttttaata |
433 |
Q |
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| T |
51809507 |
accagt----actaccactat-----ttttctaggattaggatatttttcttagaacaaaaaatgggttaaatgtttttaata |
51809580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 51809218 - 51809310
Alignment:
| Q |
21 |
aaaatcccaattattgaatgaatttactaaaaattcaatctttagtgaaatgggtcaattttttgcagcctcagtttgtaatttgcaaagaaa |
113 |
Q |
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| T |
51809218 |
aaaaccccaattattgaatgaatttactaaaaattcaatcttttgtgaaatgggtcaattttttgcagcctcagtttgtaatttgaaaagaaa |
51809310 |
T |
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