View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_high_26 (Length: 455)

Name: NF19927_high_26
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_high_26
NF19927_high_26
[»] chr5 (4 HSPs)
chr5 (19-444)||(13473019-13473444)
chr5 (311-360)||(24300871-24300920)
chr5 (311-360)||(24372395-24372444)
chr5 (301-349)||(6291670-6291718)
[»] chr8 (1 HSPs)
chr8 (205-390)||(16952479-16952667)
[»] chr1 (2 HSPs)
chr1 (306-358)||(44382624-44382676)
chr1 (310-360)||(3584330-3584380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (291-360)||(11569-11638)
[»] chr3 (2 HSPs)
chr3 (295-358)||(51046809-51046872)
chr3 (310-362)||(24409258-24409310)
[»] chr6 (1 HSPs)
chr6 (294-364)||(7779871-7779941)
[»] chr7 (1 HSPs)
chr7 (291-347)||(1555236-1555292)
[»] chr2 (1 HSPs)
chr2 (294-350)||(14825032-14825088)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 13473019 - 13473444
Alignment:
Q  19 acttcacttagtttcctccatatataggcaattcataactatatttatgttttcttgtctttttacttttaatgctaattttaaatttgagtcaacttac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13473019 acttcacttagtttcctccatatataggcaattcataactatatttatgttttcttgtctttttacttttaatgccaattttaaatttgagtcaacttac 13473118  T
Q  119 ttctctattgatttataatgtgagttcttagatggatcactttcataattggtccaccgtggaccaatacttaaaattaacgagtatcaacgatattatt 218  Q
    |||||| ||||||||||||||||||||||||||| | ||| ||||||| || || |  |||||||||||||||||||||| |||||||||||||||||||    
T  13473119 ttctctgttgatttataatgtgagttcttagatgaaccaccttcataagtgatctattgtggaccaatacttaaaattaatgagtatcaacgatattatt 13473218  T
Q  219 taaaaacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcggatataagatatatatttattttctgtcgttttaatc 318  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473219 tataaacaaaaacacacgacccttctcatatttacaactaacatggtgaatgtattgatttcggatataagatatatatttattttctgtcgttttaatc 13473318  T
Q  319 aaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaataacatatgtcgtttgagttttaaacaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||| ||||||||||    
T  13473319 aaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagttgtcaacaactatcactaaaaaataacatacgtcgtttgaattttaaacaa 13473418  T
Q  419 tttttaagtattagtccttgatgatg 444  Q
    ||||||||||  |||||| |||||||    
T  13473419 tttttaagtaacagtcctcgatgatg 13473444  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 24300920 - 24300871
Alignment:
Q  311 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 360  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24300920 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24300871  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 24372395 - 24372444
Alignment:
Q  311 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 360  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24372395 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24372444  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 6291670 - 6291718
Alignment:
Q  301 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaat 349  Q
    |||| ||| ||||||||||||  ||| ||||||||||||||||||||||    
T  6291670 ttttatgttgttttaatcaaaatgatatcaattaaatcattatttcaat 6291718  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 390
Target Start/End: Complemental strand, 16952667 - 16952479
Alignment:
Q  205 tcaacgatattatttaaaaacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcgg----atataagatatatattta 300  Q
    ||||||||| |||| ||||| |||| ||||||| |||| ||||||||||  |||| ||||||| |  |||||| ||||    |||  || || |||||||    
T  16952667 tcaacgatactattgaaaaataaaa-cacatgatccttttcatatttacggctaagatggtgacttgattgatatcggttcaataggagctacatattta 16952569  T
Q  301 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaa 390  Q
    ||||| || ||||||||||||||| |||||||||| ||| |||||||||| ||||||||| |||  || | |||| ||| ||||||||||    
T  16952568 ttttccgttgttttaatcaaaccggtttcaattaagtcactatttcaatcttaaaaatgaggaggatcattaacatctatcactaagaaa 16952479  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 44382624 - 44382676
Alignment:
Q  306 tgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 358  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||||||||    
T  44382624 tgtcgttatgatcaaactgatatcaattaaatcattatttcaatcataaaaat 44382676  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 3584330 - 3584380
Alignment:
Q  310 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 360  Q
    ||||||||||||| | | ||||||||||||||||||||||| |||||||||    
T  3584330 gttttaatcaaactggtatcaattaaatcattatttcaatcttaaaaatga 3584380  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 11569 - 11638
Alignment:
Q  291 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 360  Q
    |||||||||||||||  | ||||||||| || | || |||| ||||| ||||||||||||||||||||||    
T  11569 tatatatttattttccattgttttaatccaatctatatcaaataaattattatttcaatcataaaaatga 11638  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 51046809 - 51046872
Alignment:
Q  295 tatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 358  Q
    |||||| ||| ||| ||||||||||||  |||  |||||||||||||||||||||| |||||||    
T  51046809 tatttagtttttgttgttttaatcaaattgataacaattaaatcattatttcaatcgtaaaaat 51046872  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 24409310 - 24409258
Alignment:
Q  310 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaag 362  Q
    |||||||||||||  || |||||||||||||||||| |||| ||||| |||||    
T  24409310 gttttaatcaaactaatatcaattaaatcattatttgaatcttaaaattgaag 24409258  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 7779871 - 7779941
Alignment:
Q  294 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagag 364  Q
    ||||||||||||  | ||||||||||||  ||| ||| |||| |||||||||||||| ||||||| |||||    
T  7779871 atatttattttccatagttttaatcaaattgatatcagttaagtcattatttcaatcgtaaaaataaagag 7779941  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 1555236 - 1555292
Alignment:
Q  291 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttca 347  Q
    |||||||||||||| | | ||||||||||||||||| ||| |||| | |||||||||    
T  1555236 tatatatttattttttcttgttttaatcaaaccgatgtcatttaatttattatttca 1555292  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 14825088 - 14825032
Alignment:
Q  294 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatc 350  Q
    ||||||||||| ||| | ||||||||||| ||| ||||| |||| ||||||||||||    
T  14825088 atatttattttatgttggtttaatcaaactgatatcaatcaaataattatttcaatc 14825032  T

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