View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_high_3 (Length: 748)

Name: NF19927_high_3
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_high_3
NF19927_high_3
[»] chr4 (1 HSPs)
chr4 (8-731)||(3190799-3191521)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 731
Target Start/End: Complemental strand, 3191521 - 3190799
Alignment:
Q  8 catcatcaagaaaatacttggtaaaatcattttgcatgaaaccttctattccttctctcattcaagccaatacnnnnnnnnnngtatggttacagaagnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||      
T  3191521 catcatcaagaaaatacttggtaaaatcattttgcatgaaaccttctattccttctctcattcaagccaatacttttttttttgtatggttacagaagaa 3191422  T
Q  108 nnnnnnnnnnnnnnnnnnnncaactactccctaggaatggagattctcaaagcatatgcaagcatggcagtagcaaactccacctccattggcggagatg 207  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3191421 aaaagtaaagaaaagaaaaacaactactccctaggaatggagattctcaaagcatatgcaagcatggcagtagcaaactccacctccattggcggagatg 3191322  T
Q  208 acacaatattcagagttaagttgagaagatcccttttggcggaaaaatcaacacattgatttccttcttgaagagtatgttggaacttcacatgcgaact 307  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3191321 acacaatattcagagttaagttgagaagaacccttttgg-ggaaaaatcagcacattgatttccttcttgaagagtacgttggaacttcacatgcgaact 3191223  T
Q  308 catgaaaaggttggaccatttcatttaataactttatagcaacgagggagtccgaaaaacatgccaatgattctcaatgaagtttattgttgtagccaat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3191222 catgaaaaggttggaccatttcatttaataactttatagcaacgagggagtccgaaaaacatgccaatgattctcaatgaagtttattattgtagccaat 3191123  T
Q  408 gtgaccatgaaaaccagttatcaatcaccattatcagatctcaccaagccaccaaaacgaccaactccaagattcaagccaactatttagcaaaataagg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |    
T  3191122 gtgaccatgaaaaccagttatcaatcaccattatcagatctcaccaagccaccaaaacgaccaaatccaagattcaagccaactatttagccaaataaag 3191023  T
Q  508 agtgcatgtattcattcattcatatatgaaataaacaaaatttaaattgattattgtaattaatagctcttgatcacattaatttgcaataaattactat 607  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3191022 agagaatgtattcattcattcatatatgaaataaacaaaatttaaattgattattgtaattaatagctcttgatcacattaatttgcaataaattactat 3190923  T
Q  608 ttaaatttaaaattgtttgttctaggaatcaaataatccgatgtttacaattttttatgaactaaaatattaatttatcccctaaactagatgaacccct 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3190922 ttaaatttaaaattgtttgttctaggaatcaaataatccgatgtttacaattttttatgaactaaaatattaatttatcccctaaactagataaacccct 3190823  T
Q  708 tccataataatttatgaaaataat 731  Q
    ||||||||||||||||||||||||    
T  3190822 tccataataatttatgaaaataat 3190799  T

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