View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_34 (Length: 433)
Name: NF19927_high_34
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 30978226 - 30978650
Alignment:
| Q |
1 |
attgtgtttcttcacctcttcatagctcttgatgctcttactcatcatgatttcacttctttgaggatttaaaagaggaagagatagagaaggtgttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30978226 |
attgtgtttcttcacctcttcatagctcttgatgctcttactcatcatgatttcacttctttgaggatttaaaagaggaagagatagagaaggtgttaat |
30978325 |
T |
|
| Q |
101 |
cttggtttcttatcatcatggatagtatgaggtaaggaaggtgaaggtggagaagataaagagagataaagtggagaagaacaaggagtagttgaggtag |
200 |
Q |
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| T |
30978326 |
cttggtttcttatcatcatggatagtatgaggtaaggaaggtgaaggtggagaagataaagagagataaagtggagaagaacaaggagtagttgagctag |
30978425 |
T |
|
| Q |
201 |
gggtagggtttggtttattattattagggcattgatcagaattaacccaagaagatattaatgatgatcttaatcttgccctatctcttctatggacatt |
300 |
Q |
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| T |
30978426 |
gggtagggtttggtttattattattagggcattgatcagaattaacccaagaagatattaatgatgatcttaatcttgccctatctcttctatggacatt |
30978525 |
T |
|
| Q |
301 |
catatgtccacctaaagcttgagctgacctaaactctcttttgcaaaaactacaagaatagtttcttgctggccatgatgttccccatgaatgctcctca |
400 |
Q |
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| T |
30978526 |
catatgtccacctaaagcttgagctgacctaaactctcttttgcaaaaactacaagaatagtttcttgctggccatgatgttccccatgaatgctcctca |
30978625 |
T |
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| Q |
401 |
aatcccaagttatgatgatgatgat |
425 |
Q |
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| T |
30978626 |
aatcccaagttatgatgatgatgat |
30978650 |
T |
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Back To:
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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 360
Target Start/End: Original strand, 6889820 - 6889906
Alignment:
| Q |
274 |
tcttgccctatctcttctatggacattcatatgtccacctaaagcttgagctgacctaaactctcttttgcaaaaactacaagaata |
360 |
Q |
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|||||| |||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||||||||| |
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| T |
6889820 |
tcttgctctatcttttctatgaacattcatatgtccacctaatgcttgtgctgacctaaactctcttctacaaaagctacaagaata |
6889906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 30726622 - 30726683
Alignment:
| Q |
281 |
ctatctcttctatggacattcatatgtccacctaaagcttgagctgacctaaactctctttt |
342 |
Q |
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| T |
30726622 |
ctatctcttctatgaacattcatgtgaccacctaaagcttgagcagacctaaactctctttt |
30726683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 34522679 - 34522612
Alignment:
| Q |
281 |
ctatctcttctatggacattcatatgtccacctaaagcttgagctgacctaaactctcttttgcaaaa |
348 |
Q |
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|||||||| ||||| | |||||| || ||||| | ||||||||| ||||||||||||||||| ||||| |
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| T |
34522679 |
ctatctctcctatgaatattcatgtgaccaccaagagcttgagcagacctaaactctcttttacaaaa |
34522612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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