View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_high_38 (Length: 405)

Name: NF19927_high_38
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_high_38
NF19927_high_38
[»] chr5 (3 HSPs)
chr5 (3-389)||(40743675-40744063)
chr5 (3-88)||(40756191-40756276)
chr5 (103-142)||(40756294-40756333)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 3 - 389
Target Start/End: Original strand, 40743675 - 40744063
Alignment:
Q  3 tgggtagattattcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagattnnnnnnnnnnnnn 102  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  40743675 tgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagataaaaaaaaaaaaaa 40743774  T
Q  103 --tcttcaggagaagctactcaaaacaacttcttatttgatagtacaatttttaaatgnnnnnnnctttcagattcttatnnnnnnnnnnnnnnntttat 200  Q
      |||||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||               |||||    
T  40743775 aatcttcaagagaagctactcaaaacaacttcttatttgatagtacaatttttaaatttttttttctttcagattcttataaaaaaaataaaaaatttat 40743874  T
Q  201 aacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgattca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40743875 aacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgattca 40743974  T
Q  301 tacatatttccttaacctttctcctaatgtattatttgaagaatataatgattttcaatttccatatcctataaaatatgggaatattg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40743975 tacatatttccttaacctttctcctaatgtattatttgaagaatataatgattttcaatttccatatcctataaaatatgggaatattg 40744063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 40756191 - 40756276
Alignment:
Q  3 tgggtagattattcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagat 88  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40756191 tgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagat 40756276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 40756294 - 40756333
Alignment:
Q  103 tcttcaggagaagctactcaaaacaacttcttatttgata 142  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  40756294 tcttcaagagaagctactcaacacaacttcttatttgata 40756333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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