View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_high_39 (Length: 405)
Name: NF19927_high_39
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 74 - 338
Target Start/End: Original strand, 29469456 - 29469721
Alignment:
| Q |
74 |
aagggctaaaagttattttgttg-tgtaaggagaagaccaactctataaattataaaatgataaaatcatttgttacattcaaagaggtgatgcatggct |
172 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
29469456 |
aagggctaaaagttattttgttggtgtaaggagaagaccaactctataaattataaaatgataaaatcatttgttacattcaaagaggggatgcatgact |
29469555 |
T |
|
| Q |
173 |
ataattattaaatttgttcatgttttgattatttttctttctctttttcatgttgtaaagaatgacgacagtgagttacttttatcttttattgaagaag |
272 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
29469556 |
ataattatcaaatttgttaatgttttgattatttttctttctctttttcatgttgcaaagaatgacgacaataaattacttttatcttttattgaagaag |
29469655 |
T |
|
| Q |
273 |
gtaagctacttttattatttacaaatttccttattttgtaaacaatatttatcccatgttagttga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
29469656 |
gtaagctacttttattatttacaaatttccttatttcgtacgcaatatttattccatgttagttga |
29469721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 29481336 - 29481517
Alignment:
| Q |
77 |
ggctaaaagttattttgttg-tgtaaggagaagaccaactctataaattataaaatgataaaatcatttgttacattcaaagaggtgatgcatggctata |
175 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| | |
|
|
| T |
29481336 |
ggctaaaaactattttgttggtgtaaggagaatgccaactctataaattataaaatgataaaatcatttgttacatgcaaagaggggatacatggctgga |
29481435 |
T |
|
| Q |
176 |
attattaaatttgttcatgttttgattatttttctttctctttttcatgttgtaaagaatgacgacagtgagttacttttat |
257 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
29481436 |
attatcaagtttgttcatgttttgattatatttctttctctttttcatgttgtaaagaatgacgatggtaagttacttttat |
29481517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 29481502 - 29481567
Alignment:
| Q |
272 |
ggtaagctacttttattatttacaaatttccttattttgtaaacaatatttatcccatgttagttga |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
29481502 |
ggtaagttacttttattatttacaaatttcctta-ttcatagacaatatttatcccatgttagttga |
29481567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29469381 - 29469418
Alignment:
| Q |
1 |
tagttaagagagattcaataattattctaattttatga |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469381 |
tagttaagagagattcaataattattctaattttatga |
29469418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29481259 - 29481300
Alignment:
| Q |
1 |
tagttaagagagattcaataattattctaattttatgaaggg |
42 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29481259 |
tagttgagagagattccataattattctaattttatgaaggg |
29481300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University