View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_40 (Length: 405)
Name: NF19927_high_40
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 7996869 - 7997245
Alignment:
| Q |
13 |
aatatcatcagaacaatttgcaagaagttcctctaaaatcttcaaattaccacctctagcagcagcatgaacagctctattaattatttccaacctataa |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7996869 |
aatatcatcagaacaatttgcaagaagttcctctaaaatcttcaaattaccacctctagcagcagcatgaacagctctattaatcatttccaacctataa |
7996968 |
T |
|
| Q |
113 |
gcagaaggaatttcaccaatttgttcttccataatcccacctctacttgtaacaaaccttggtgaaactgcaaaatcaaaaagcagcttaaaaacatcac |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7996969 |
gcagaaggaatttcaccaatttgttcttccataatcccacctctacttgtaacaaaccttggtgaaactgcaaaatcaaaaagcagcttaaaaacatcac |
7997068 |
T |
|
| Q |
213 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaaggattcctctcaagaagaatttgaacaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7997069 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaaggattcctctcaagaagaatttgaacaaa |
7997168 |
T |
|
| Q |
313 |
gttgaagtctccggctgatgcagccgtgtacattagccatccaccatagcctgacttgatcaaagaattcttcgatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7997169 |
gttgaagtctccggctgatgcagccgtgtacattagccatccaccgtagcctgacttgatcaaagaattcttcgatt |
7997245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 8021934 - 8021557
Alignment:
| Q |
13 |
aatatcatcagaacaatttgcaagaagttcctctaaaatcttcaaattaccacctctagcagcagcatgaacagctctattaattatttccaacctataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8021934 |
aatatcatcagaacaatttgcaagaagttcctctaaaatcttcaaattaccacctctagcagcagcatgaacagctctattaatcatttccaacctataa |
8021835 |
T |
|
| Q |
113 |
gcagaaggaatttcaccaatttgttcttccataatcccacctctacttgtaacaaaccttggtgaaactgcaaaa-tcaaaaagcagcttaaaaacatca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8021834 |
gcagaaggaatttcaccaatttgttcttccataatcccacctctacttgtaacaaaccttggtgaaactgcaaaaatcaaaaagcagcttaaaaacatca |
8021735 |
T |
|
| Q |
212 |
caattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaaggattcctctcaagaagaatttgaacaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8021734 |
caattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaaggattcctctcaagaagaatttgaacaa |
8021635 |
T |
|
| Q |
312 |
agttgaagtctccggctgatgcagccgtgtacattagccatccaccatagcctgacttgatcaaagaattcttcgatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8021634 |
agttgaagtctccggctgatgcagccgtgtacattagccatccaccgtagcctgacttgatcaaagaattcttcgatt |
8021557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 34397289 - 34397218
Alignment:
| Q |
213 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
284 |
Q |
| |
|
||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
34397289 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
34397218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 38831392 - 38831428
Alignment:
| Q |
57 |
aattaccacctctagcagcagcatgaacagctctatt |
93 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| |
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|
| T |
38831392 |
aattcccacctctagcagcagcatgaacacctctatt |
38831428 |
T |
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