View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_high_43 (Length: 395)
Name: NF19927_high_43
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 29469784 - 29470149
Alignment:
| Q |
16 |
aatatgtgtccgtcttctttaaaagaaatgtgttattttatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccata |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469784 |
aatatgtgtccgtctcctttaaaagaaatgtgttatttcatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccata |
29469883 |
T |
|
| Q |
116 |
atccaatgatccaatgaattggcagtaggcttggaacttggaagggaatgcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtc |
215 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469884 |
atccaatgatccaatgaattggaagtaagcttgaaacttggaagggaatgcgtccttcaccgtgaaggatatccaaattgtgatgtcagctgaacatgta |
29469983 |
T |
|
| Q |
216 |
acaaattgccccttcaagcatcgtgccttgaattctgattccttttatgtggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtc |
315 |
Q |
| |
|
||| | ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
29469984 |
acagagtgccccttcaagcattgtgctttgaattttgattccttttatgtggcaaatcatggttcttgattttagtctaatgcacaattcattgttagtc |
29470083 |
T |
|
| Q |
316 |
ctttggccacgatattgttcacggtttgcatgttaattccacactaatttaagccaatgtatgtag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
29470084 |
ctttggccacgatattgttcacggtttgtatgttaatttcacactaattgaagccaatgtatgtag |
29470149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 165 - 381
Target Start/End: Original strand, 29462152 - 29462375
Alignment:
| Q |
165 |
gcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtcacaaattgccccttcaagcatcgtgccttgaattctgattccttttatg |
264 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| || |||||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
29462152 |
gcgtccttcaccgcgaaggatatccaaattgtgatgtcaactaaacatgtcacaaggtgccccatcaagcaacgtgccttgaattttgattccctttatg |
29462251 |
T |
|
| Q |
265 |
tggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtcctttggccacgatattgttcacggtttg-------catgttaattccac |
357 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
29462252 |
aggcagatcatggttcttgattttattctaatgcacaattctttgttagtcctttggtcacgatattgttcacggtttgcattattcatgttaatttcac |
29462351 |
T |
|
| Q |
358 |
actaatttaagccaatgtatgtag |
381 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
29462352 |
actaatttaagcctatgtatgtag |
29462375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 29481622 - 29481656
Alignment:
| Q |
19 |
atgtgtccgtcttctttaaaagaaatgtgttattt |
53 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
29481622 |
atgtgtccgtctcctttaaaagaaatgtgttattt |
29481656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University