View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_48 (Length: 388)
Name: NF19927_high_48
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 37154374 - 37153996
Alignment:
| Q |
1 |
tacaatgcattcaacattaataataatcatgaacttttatttatgtaattatgtactattatataagcatccatatgattccttatnnnnnnn-ttcaaa |
99 |
Q |
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| T |
37154374 |
tacaatgcattcaacattaataataatcatgaacttttatttatgtaattatgtactattatataagcatccatatgattccttataaaaaaaattcaaa |
37154275 |
T |
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| Q |
100 |
cattgagtttttaatatactttcatactttattttttgaagaacccccatacaaaatttataaatgtgttttagtctaacaacaagaacattgagataaa |
199 |
Q |
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| T |
37154274 |
cattgagtttttaatatactttcatactttattttttgaagcacccccatacaaaatttataaatgtgttttagtctaacaacaagaacattgagataaa |
37154175 |
T |
|
| Q |
200 |
aatacaaaagtgataagtagaaaagaaaaaatgaacctttgatgataacaagtataaagagtatgaataaaaattggaggtgatatataaagctccttaa |
299 |
Q |
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| T |
37154174 |
aatacaaaagtgataagtagaaaagaaaaaatgaacctttgatgataccaagtataaagagcatgaagaaaaatgggaggaaagaaataaagctccacaa |
37154075 |
T |
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| Q |
300 |
ttatctttttaatcctgtagatgaatgcatgataacttacaactatcattaaacgatgttacggtcagattgtttttct |
378 |
Q |
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|| | ||| |||| |||||||| ||||||||| |||||||| | |||| ||||||| ||| || |||||||||| |
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| T |
37154074 |
tttggtccctaaacctgcagatgaatccatgataacatacaactaactataaatgatgttatggtgagcttgtttttct |
37153996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 37199729 - 37199351
Alignment:
| Q |
1 |
tacaatgcattcaacattaataataatcatgaacttttatttatgtaattatgtactattatataagcatccatatgattccttatnnnnnnn-ttcaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37199729 |
tacaatgcattcaacattaataataatcatgaacttttatttatgtaattatgtactattatataagcatccatatgattccttataaaaaaaattcaaa |
37199630 |
T |
|
| Q |
100 |
cattgagtttttaatatactttcatactttattttttgaagaacccccatacaaaatttataaatgtgttttagtctaacaacaagaacattgagataaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199629 |
cattgagtttttaatatactttcatactttattttttgaagcacccccatacaaaatttataaatgtgttttagtctaacaacaagaacattgagataaa |
37199530 |
T |
|
| Q |
200 |
aatacaaaagtgataagtagaaaagaaaaaatgaacctttgatgataacaagtataaagagtatgaataaaaattggaggtgatatataaagctccttaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||| | | |||||||||| || |
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| T |
37199529 |
aatacaaaagtgataagtagaaaagaaaaaatgaacctttgatgataccaagtataaagagcatgaagaaaaatgggaggaaagaaataaagctccacaa |
37199430 |
T |
|
| Q |
300 |
ttatctttttaatcctgtagatgaatgcatgataacttacaactatcattaaacgatgttacggtcagattgtttttct |
378 |
Q |
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|| | ||| |||| |||||||| ||||||||| |||||||| | |||| ||||||| ||| || |||||||||| |
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| T |
37199429 |
tttggtccctaaacctgcagatgaatccatgataacatacaactaactataaatgatgttatggtgagcttgtttttct |
37199351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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