View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_59 (Length: 349)
Name: NF19927_high_59
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 38 - 334
Target Start/End: Complemental strand, 33658869 - 33658573
Alignment:
| Q |
38 |
gaggaccaataagaacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
137 |
Q |
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| T |
33658869 |
gaggaccaataagaacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
33658770 |
T |
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| Q |
138 |
agctgcaaatagtactccaatcacattatcagcaatttcttcatctgttagagtttgtccattttcatccttgtaatttagcaagttgcctaatagattc |
237 |
Q |
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| T |
33658769 |
agctgcaaatagtactccaatcacattatcagcaatttcttcatctgttagagtttgtccattttcatccttgtagtttaagaagttgcctaatagattc |
33658670 |
T |
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| Q |
238 |
ttctcaatcaatctccgctcctttttcttgcaaattatttcgcttataatctcccgaattctctgcctcgcctttagtgcatttaatcaaaagacat |
334 |
Q |
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| T |
33658669 |
ttctcaatcaatctctgctcctttttcttgcaaattatttcacttataatctcccgaattctctgcctcgcctttagtgcatttaatcaaaagacat |
33658573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 310
Target Start/End: Complemental strand, 33699542 - 33699283
Alignment:
| Q |
51 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttgagctgcaaatagt |
150 |
Q |
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| T |
33699542 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttgagctgcaaatagt |
33699443 |
T |
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| Q |
151 |
actccaatcacattatcagcaatttcttcatctgttagagtttgtccattttcatccttgtaatttagcaagttgcctaatagattcttctcaatcaatc |
250 |
Q |
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| T |
33699442 |
actccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaaatggcctaatagatccttctcattcaatc |
33699343 |
T |
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| Q |
251 |
tccgctcctttttcttgcaaattatttcgcttataatctcccgaattctctgcctcgcct |
310 |
Q |
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| T |
33699342 |
tttgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcct |
33699283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33658923 - 33658885
Alignment:
| Q |
1 |
ttaatgattttcaacacttatggcctacaaagattttga |
39 |
Q |
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| T |
33658923 |
ttaatgattttcaacacttatggcctacaaagattttga |
33658885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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