View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_67 (Length: 331)
Name: NF19927_high_67
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 258290 - 258586
Alignment:
| Q |
1 |
taaagacttgttgccattttgttgtgacatgttttaccatgcatgtgtatatatagtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258290 |
taaagacttgttgccattttgttgtgacatgttttacaatgcatgtgtata----gtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
258385 |
T |
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| Q |
101 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
200 |
Q |
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| T |
258386 |
cacagagcctcccttattgtttaggaagaaacc----tatatgcaagtgacaaacttagtttctttgaagttttag-tttactatgatgcttgttgatga |
258480 |
T |
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| Q |
201 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
300 |
Q |
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| T |
258481 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
258570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 657631 - 657335
Alignment:
| Q |
1 |
taaagacttgttgccattttgttgtgacatgttttaccatgcatgtgtatatatagtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657631 |
taaagacttgttgccattttgttgtgacatgttttacaatgcatgtgtata----gtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
657536 |
T |
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| Q |
101 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
200 |
Q |
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| T |
657535 |
cacagagcctcccttattgtttaggaagaaacct----atatgcaagtgacaaacttagtttctttgaagttttag-tttactatgatgcttgttgatga |
657441 |
T |
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| Q |
201 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
300 |
Q |
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| T |
657440 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
657351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 843366 - 843070
Alignment:
| Q |
1 |
taaagacttgttgccattttgttgtgacatgttttaccatgcatgtgtatatatagtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843366 |
taaagacttgttgccattttgttgtgacatgttttacaatgcatgtgtata----gtaaggatatgatgaatacatctgtatgtatttcatgttcttcac |
843271 |
T |
|
| Q |
101 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
200 |
Q |
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| T |
843270 |
cacagagcctcccttattgtttaggaagaaacct----atatgcaagtgacaaacttagtttctttgaagttttag-tttactatgatgcttgttgatga |
843176 |
T |
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| Q |
201 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843175 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
843086 |
T |
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