View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_high_71 (Length: 325)
Name: NF19927_high_71
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 22325123 - 22324807
Alignment:
| Q |
1 |
acttctacgatatcgtgagagacgaggatcttctgaattatagtcaagagttattagaagctgcaaagaaatatgatgtaattgatctgataaaggatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22325123 |
acttctacgatatcgtgagagacgaggatcttctgaattatagtcaagagttattagaagctgcaaagaaatatgatgtaattgatttgataaaggatat |
22325024 |
T |
|
| Q |
101 |
tgagaaaaggctcataagagatatcactacacagaatgtagttgagaggatgaagatagcataccgctatgacttgaagactttgaggaatcagtgtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22325023 |
tgagaaaaggctcataagagatatcactacacagaatgtagttgagaggatgaagataacataccgctatgacttgaagactttgaggaatcagtgtgct |
22324924 |
T |
|
| Q |
201 |
cgtttacttgtggagtttaaaaaattgcacacccttcggacagaaattcgtgcttaccgtagaactgttgatatggatacaattagcaaaatgttttctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22324923 |
cgtttacttgtggagtttaaaaaattgcacacccttcggacagaaattcgtgcttaccgtagaactgttgatatggatacaattagcaaaatgttttctg |
22324824 |
T |
|
| Q |
301 |
atttttgtacctttgct |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22324823 |
atttttgtacctttgct |
22324807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University