View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_high_76 (Length: 309)

Name: NF19927_high_76
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_high_76
NF19927_high_76
[»] chr8 (7 HSPs)
chr8 (1-144)||(14121451-14121594)
chr8 (1-144)||(14114024-14114170)
chr8 (245-309)||(23754716-23754778)
chr8 (246-306)||(36612089-36612149)
chr8 (168-217)||(1370403-1370452)
chr8 (265-309)||(45406013-45406055)
chr8 (262-309)||(42733591-42733636)
[»] chr2 (3 HSPs)
chr2 (167-233)||(40209964-40210032)
chr2 (245-309)||(40210077-40210139)
chr2 (255-309)||(43487379-43487430)
[»] chr7 (5 HSPs)
chr7 (167-238)||(41750206-41750279)
chr7 (167-233)||(31289259-31289327)
chr7 (167-233)||(9792875-9792943)
chr7 (245-309)||(29723936-29723999)
chr7 (256-309)||(21103012-21103063)
[»] chr1 (3 HSPs)
chr1 (167-233)||(702383-702451)
chr1 (167-230)||(15067723-15067789)
chr1 (245-309)||(46281436-46281498)
[»] chr3 (14 HSPs)
chr3 (167-233)||(40367715-40367783)
chr3 (167-233)||(45292925-45292993)
chr3 (167-217)||(23553487-23553537)
chr3 (167-217)||(23553674-23553724)
chr3 (245-309)||(27168691-27168753)
chr3 (229-309)||(33389008-33389086)
chr3 (167-233)||(33389114-33389182)
chr3 (167-232)||(46742198-46742265)
chr3 (245-309)||(288725-288787)
chr3 (245-306)||(13348144-13348204)
chr3 (262-309)||(28539767-28539811)
chr3 (245-309)||(40367608-40367670)
chr3 (246-309)||(42477961-42478021)
chr3 (245-309)||(45293038-45293100)
[»] chr5 (7 HSPs)
chr5 (167-233)||(1981989-1982057)
chr5 (167-233)||(5899783-5899851)
chr5 (245-309)||(11954431-11954493)
chr5 (167-233)||(10008413-10008479)
chr5 (167-204)||(11773616-11773653)
chr5 (245-309)||(34379453-34379515)
chr5 (262-309)||(40039290-40039335)
[»] chr4 (5 HSPs)
chr4 (245-309)||(54909323-54909385)
chr4 (167-233)||(51734529-51734597)
chr4 (261-306)||(42135486-42135529)
chr4 (261-309)||(46212970-46213015)
chr4 (170-233)||(7146030-7146096)
[»] scaffold0178 (1 HSPs)
scaffold0178 (246-309)||(9776-9837)
[»] scaffold0056 (1 HSPs)
scaffold0056 (255-309)||(76639-76690)
[»] chr6 (2 HSPs)
chr6 (180-233)||(23632546-23632601)
chr6 (245-309)||(14817932-14817993)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14121451 - 14121594
Alignment:
Q  1 gctaccagcaccctaatcaagctcaaatcaactttgttgctggcatccaacctcaatacattcgctctgttcaaatatacactgccacacgtcggggacc 100  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||    
T  14121451 gctatcagcaccctaatcaagctgaaattacctttgttgctggcatccaacctcaatacattcgctctgttcaaatatacaccgccacgcgtcgggcacc 14121550  T
Q  101 cgggttagtatttaaaaatgaacgacaaagactaatttcacata 144  Q
    |||||||||||||||||||||| ||||| |||||||||||||||    
T  14121551 cgggttagtatttaaaaatgaatgacaatgactaatttcacata 14121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14114024 - 14114170
Alignment:
Q  1 gctaccagcaccctaatcaagctcaaatcaactttgttgctggcatccaacctcaatacattcgctctgttcaaatatacactgccacacgtc---gggg 97  Q
    |||||||| ||||||||| |||| |||||| ||||||||||||||||  ||||||||||||| ||||||||||||| ||||| ||||||||||   | ||    
T  14114024 gctaccagaaccctaatctagctgaaatcacctttgttgctggcatcgcacctcaatacatttgctctgttcaaatgtacaccgccacacgtccacgtgg 14114123  T
Q  98 acccgggttagtatttaaaaatgaacgacaaagactaatttcacata 144  Q
    |  |||||||||||||||||||||||||||| |||||||||||||||    
T  14114124 agacgggttagtatttaaaaatgaacgacaatgactaatttcacata 14114170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 23754716 - 23754778
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||| ||||| |||||||||||| |||||  |||| || |||||||||||||||||||||    
T  23754716 gagtatgaaagagaaagttgtcacaaaagttatt--aaaaaatggttgttcaaatatcatttctc 23754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 36612089 - 36612149
Alignment:
Q  246 agtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcattt 306  Q
    ||||||| |||||| ||||||||||||||| ||  ||||| ||||||| ||||||||||||    
T  36612089 agtatgagggagaaagttgtcacaaaaattgttataaaatttagttgtacaaatatcattt 36612149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 1370452 - 1370403
Alignment:
Q  168 tatttggacaaccaaaatcaaacaattctagtgacaacttatttttctct 217  Q
    ||||| ||||||||||||||||||| |||| ||||||| | |||||||||    
T  1370452 tatttagacaaccaaaatcaaacaactctattgacaacctttttttctct 1370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 45406013 - 45406055
Alignment:
Q  265 tcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    |||||||||||||| |||||||  |||||||||||||||||||||    
T  45406013 tcacaaaaattattaaaaaata--gttgttcaaatatcatttctc 45406055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 42733591 - 42733636
Alignment:
Q  262 ttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||    
T  42733591 ttgtcacaaaaattgtttaaaaatg--gttgttcaaatatcatttctc 42733636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 40209964 - 40210032
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||  |||||||||||||||||||||    
T  40209964 atatttggacaaccaaaatcaaacaattctattgacaaccttttttcctctcttcttattggacaataa 40210032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 40210077 - 40210139
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  40210077 gagtatgagagagaaagttgtcacaaaaattatttaaaa--atagttgttcaaatatcatttctc 40210139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 43487430 - 43487379
Alignment:
Q  255 gagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||| |||||||||||||||||   |||| || |||||||||||||||||||||    
T  43487430 gagaaagttgtcacaaaaattat---aaaaaatggttgttcaaatatcatttctc 43487379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 41750279 - 41750206
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataatagta 238  Q
    ||||||| |||||||||||||||||||| |||||||||| | ||||  ||||||||||||||||||||| ||||    
T  41750279 atatttgaacaaccaaaatcaaacaattttagtgacaaccttttttcctctcttcttattggacaataacagta 41750206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 31289259 - 31289327
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttattt--ttctcttcttattggacaataa 233  Q
    |||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||||||||||||    
T  31289259 atatttggacaaccaaaatcaaacaactttaatgacaactttttttcttctcttcttattggacaataa 31289327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 9792943 - 9792875
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    ||||||| |||||||||||||||||| | |||||||||| | ||||  |||||||||||||||||||||    
T  9792943 atatttgaacaaccaaaatcaaacaactttagtgacaaccttttttcctctcttcttattggacaataa 9792875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 29723936 - 29723999
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| |||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  29723936 gagtatgagagagaaagttgtcacaaaaattatcaaaaaa-atagttgttcaaatatcatttctc 29723999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 21103063 - 21103012
Alignment:
Q  256 agaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    |||| ||||||||||||||| |||||||  |||||||||||||||| |||||||    
T  21103063 agaaagttgtcacaaaaattgtttaaaa--atagttgttcaaatataatttctc 21103012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 702383 - 702451
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttttctc--ttcttattggacaataa 233  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||| |||  |||||||||||||||||    
T  702383 atatttggacaaccaaaatcaaacaactctattgacaactttttttcctcctttcttattggacaataa 702451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 15067723 - 15067789
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt---tctcttcttattggacaa 230  Q
    ||||||||||||||||||||||| || | |||||||||| | ||||   ||||||||||||||||||    
T  15067723 atatttggacaaccaaaatcaaataactttagtgacaacatttttttcctctcttcttattggacaa 15067789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 46281498 - 46281436
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| ||||||||||||||||||  | || |||||||| |||||||||||||||    
T  46281498 gagtatgagagagaaagttgtcacaaaaattatt--acaaaatagttgtacaaatatcatttctc 46281436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 40367783 - 40367715
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    |||||||||||||||||||||||||| |||| ||||||| | ||||  ||||||||||||||| |||||    
T  40367783 atatttggacaaccaaaatcaaacaactctattgacaaccttttttcctctcttcttattggataataa 40367715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 45292925 - 45292993
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    |||||||||||||||||||||||||| |||| ||||||| | ||||  ||| |||||||||||||||||    
T  45292925 atatttggacaaccaaaatcaaacaactctattgacaaccttttttcctcttttcttattggacaataa 45292993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 23553487 - 23553537
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttttctct 217  Q
    |||||||||||||||||||||||||| | |||||||||| | |||||||||    
T  23553487 atatttggacaaccaaaatcaaacaactttagtgacaacctttttttctct 23553537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 23553674 - 23553724
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttttctct 217  Q
    |||||||||||||||||||||||||| | |||||||||| | |||||||||    
T  23553674 atatttggacaaccaaaatcaaacaactttagtgacaacctttttttctct 23553724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 27168691 - 27168753
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| ||||||||||||||||||  |||| || |||||||||||||||||||||    
T  27168691 gagtatgagagagaaagttgtcacaaaaattatt--aaaaaatggttgttcaaatatcatttctc 27168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 33389086 - 33389008
Alignment:
Q  229 aataatagtatcacgagagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||| ||||| | ||||||||||  ||||| ||||||||||||||| |||||||   | |||||||||||||||||||||    
T  33389086 aataaaagtataatgagagtatgagagagaaagttgtcacaaaaattgtttaaaa--gtggttgttcaaatatcatttctc 33389008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 33389182 - 33389114
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    |||||| ||||||||||||||||||| |||| ||||||| | ||||  ||||||||||||||| |||||    
T  33389182 atattttgacaaccaaaatcaaacaactctattgacaaccttttttcctctcttcttattggataataa 33389114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 46742198 - 46742265
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaata 232  Q
    |||||| ||||||||||||||||||||| || ||||||| | ||||  ||||||||||||||| ||||    
T  46742198 atattttgacaaccaaaatcaaacaattttaatgacaacattttttcctctcttcttattggataata 46742265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 288787 - 288725
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| |||||||||||| ||||  ||||| || |||||||||||||||||||||    
T  288787 gagtatgagagagaaagttgtcacaaaagttat--aaaaaaattgttgttcaaatatcatttctc 288725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 13348144 - 13348204
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcattt 306  Q
    ||||||| | ||||| ||| ||||||||||| | |||||| |||||||||||||||||||||    
T  13348144 gagtatggaagagaaagttatcacaaaaattgtctaaaaa-atagttgttcaaatatcattt 13348204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 28539767 - 28539811
Alignment:
Q  262 ttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||    
T  28539767 ttgtcacaaaaattat---aaaaaatagttgttcaaatatcatttctc 28539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 40367670 - 40367608
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  |||||  |||||||||||||| |||||||  |||||| |||||||||||||||||    
T  40367670 gagtatgagagagaaaattgtcacaaaaattgtttaaaa--atagttattcaaatatcatttctc 40367608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 42478021 - 42477961
Alignment:
Q  246 agtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  |||| |||||||||||||||||   |||| ||| ||||||||||||||||||||    
T  42478021 agtatgaaatagaaagttgtcacaaaaattat---aaaaaataattgttcaaatatcatttctc 42477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 45293038 - 45293100
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| |||||||||||| || |||||||  ||||||||| ||||||||||||||    
T  45293038 gagtatgagagagaaagttgtcacaaaagttgtttaaaa--atagttgtttaaatatcatttctc 45293100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 1982057 - 1981989
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaac--ttatttttctcttcttattggacaataa 233  Q
    ||||||| |||||||||||||||||| | || |||||||  || || ||||||||||||||||||||||    
T  1982057 atatttgaacaaccaaaatcaaacaactttaatgacaaccttttttcttctcttcttattggacaataa 1981989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 5899783 - 5899851
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttt--tctcttcttattggacaataa 233  Q
    |||||| ||||||||||||||||||||| ||||||| || | ||||  ||||||||||||||| |||||    
T  5899783 atattttgacaaccaaaatcaaacaattttagtgactaccttttttcctctcttcttattggataataa 5899851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 11954493 - 11954431
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| |||||||||||||||||  ||||  ||||||||||||||||||||||||    
T  11954493 gagtatgagagagaaagttgtcacaaaaattat--aaaacaatagttgttcaaatatcatttctc 11954431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 10008413 - 10008479
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaacttatttttctcttcttattggacaataa 233  Q
    ||||||||||||||||    |||||| | |||||||||| | ||||||||| |||||||||||||||    
T  10008413 atatttggacaaccaattgtaaacaactttagtgacaacctttttttctctccttattggacaataa 10008479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 11773616 - 11773653
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaa 204  Q
    |||||||||||||||||||||||||||| | |||||||    
T  11773616 atatttggacaaccaaaatcaaacaattattgtgacaa 11773653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 34379515 - 34379453
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  |||||  ||||||||||||||||||||||  || ||||||||||||||| |||||    
T  34379515 gagtatgagagagaaaattgtcacaaaaattatttaaaa--atggttgttcaaatatcacttctc 34379453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 40039335 - 40039290
Alignment:
Q  262 ttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||||||||||  |||||||  |||||||||||||||||||||    
T  40039335 ttgtcacaaaaattatcaaaaaata--gttgttcaaatatcatttctc 40039290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 54909385 - 54909323
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||| ||||| ||||||||||||||| ||||| |  || |||||||||||||||||||||    
T  54909385 gagtatgaaagagaaagttgtcacaaaaattgtttaata--atggttgttcaaatatcatttctc 54909323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 51734529 - 51734597
Alignment:
Q  167 atatttggacaaccaaaatcaaacaattctagtgacaa-cttatttt-tctcttcttattggacaataa 233  Q
    ||||||| |||| ||||||||||||| | ||||||||| ||| |||| |||||||||||||||||||||    
T  51734529 atatttgaacaatcaaaatcaaacaactttagtgacaatctttttttctctcttcttattggacaataa 51734597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 42135486 - 42135529
Alignment:
Q  261 gttgtcacaaaaattatttaaaaatatagttgttcaaatatcattt 306  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||    
T  42135486 gttgtcacaaaaattatttaaaa--ataattgttcaaatatcattt 42135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 46213015 - 46212970
Alignment:
Q  261 gttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||    
T  46213015 gttgtcacaaaaattat---aaaaaatagttgttcaaatatcatttctc 46212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 7146030 - 7146096
Alignment:
Q  170 tttggacaaccaaaatcaaacaattctagtgacaacttatttt---tctcttcttattggacaataa 233  Q
    ||||||||||||||||||||||| | |||||||||  | ||||   |||||| ||||||||||||||    
T  7146030 tttggacaaccaaaatcaaacaactttagtgacaatatttttttcctctctttttattggacaataa 7146096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 9837 - 9776
Alignment:
Q  246 agtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    |||||||| ||||| ||||||||||||||||  |||||| || ||||| |||||||||||||||    
T  9837 agtatgaaagagaaagttgtcacaaaaatta--taaaaaaatggttgtacaaatatcatttctc 9776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 76639 - 76690
Alignment:
Q  255 gagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||| |||||||||||||||||   |||| ||||||||||||||||||||||||    
T  76639 gagaaagttgtcacaaaaattat---aaaaaatagttgttcaaatatcatttctc 76690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 23632546 - 23632601
Alignment:
Q  180 caaaatcaaacaattctagtgacaac--ttatttttctcttcttattggacaataa 233  Q
    ||||||||||||| | ||||||||||  || |||||||||||||||||||||||||    
T  23632546 caaaatcaaacaactttagtgacaacctttgtttttctcttcttattggacaataa 23632601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 14817993 - 14817932
Alignment:
Q  245 gagtatgaaggagaatgttgtcacaaaaattatttaaaaatatagttgttcaaatatcatttctc 309  Q
    ||||||||  ||||| ||||||||||||||| |   |||| ||||||||||||||||||||||||    
T  14817993 gagtatgagagagaaagttgtcacaaaaattgt---aaaaaatagttgttcaaatatcatttctc 14817932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University