View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_80 (Length: 304)
Name: NF19927_high_80
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 14182877 - 14183020
Alignment:
| Q |
18 |
ataaccctccaccagcttctcctcagcaaccctcaactgcttcacacactcatcatgcatatcctgcaccctcaacaaagcctggtagacatgaacatca |
117 |
Q |
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| T |
14182877 |
ataaccctccaccagcttctcctcagcaaccctcaactgcttcacacactgatcatgcatatcctccaccctcaacaaagcctggtagacgtgaacatca |
14182976 |
T |
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| Q |
118 |
acatcgcgagaagcagcgacggaagaagggttagggcgaggacc |
161 |
Q |
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| T |
14182977 |
acgtcgcgagaagcagcgacggaagaagggttagggcgaggacc |
14183020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 14183088 - 14183140
Alignment:
| Q |
229 |
atgagtttggagttggttaaatgagggaagttggttaagaggttttgatggag |
281 |
Q |
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| T |
14183088 |
atgagtttggagttggttaaatgagggaagttggttaagaggttttgatggag |
14183140 |
T |
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