View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_83 (Length: 297)
Name: NF19927_high_83
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_83 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 125 - 275
Target Start/End: Original strand, 43007658 - 43007807
Alignment:
| Q |
125 |
tagcctgtagtatgaattgtgttaatgaaaaagtattaaaaattaggttcaaagtttacttctaactagcctagctatgactatnnnnnnnntattgtaa |
224 |
Q |
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| T |
43007658 |
tagcctgtagtatgaattgtgttaattaaaaagtattaaaaattaggttcaaagtttacttctaactagccttgctatgactataaaaaaaatattgt-a |
43007756 |
T |
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| Q |
225 |
aaagacgtaacgcaatttgtcatttttgttcgtaaatatgagatgtggtgt |
275 |
Q |
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| T |
43007757 |
aaagacgtaacgcaatttatcatttttgttcgtaaatatgagatgtggtgt |
43007807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 43007568 - 43007659
Alignment:
| Q |
5 |
agagagaagaattagaaagtgaaatttttgacaaatgatcatgtgatgattgnnnnnnnngagaccgataaaaagatagatgaggctagtta |
96 |
Q |
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| T |
43007568 |
agagaaaagaattagaaagtgaaatttttgacaaatgatcatgtgatgattgaaaaaaaagagaccgataaaaagatagatgaggctagtta |
43007659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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