View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_high_9 (Length: 604)
Name: NF19927_high_9
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 321 - 599
Target Start/End: Complemental strand, 40841915 - 40841637
Alignment:
| Q |
321 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40841915 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
40841816 |
T |
|
| Q |
421 |
acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40841815 |
acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg |
40841716 |
T |
|
| Q |
521 |
tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccc |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40841715 |
tttgttcgtgcgtttggagattctctaaaaacactaagttgaaaggggagaaaagggtctaatgtaagggctttttccc |
40841637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 41959182 - 41958877
Alignment:
| Q |
15 |
aaaaactgcatcagctaaagtcatagaagaataagtcaccgtaaattgaatttgaaaatcattaagcatgtaagttctcttctctcccctcaaatcatat |
114 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41959182 |
aaaaactgcatcagctagagttatagaagaataagtcaccgtaaattgaatttgaaaagcattaagcatgtaagttctcctctctcccctcaaatcatat |
41959083 |
T |
|
| Q |
115 |
accacacgattgagaagttccaaggtacccaaattcatgtctcaaattataatacagaggccaattaatgttccttatcaattctctaccaagtcttcct |
214 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41959082 |
accacacgattgagaagtttcaagatacccaaattcatgtctcaaattatactacagaggccaattaatgttcctcatcaattctctaccaagtcttcct |
41958983 |
T |
|
| Q |
215 |
ttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttttccctc |
314 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41958982 |
ttgttcaattacaattttga--------ttacagtattcaattacctgtctcattataattatgatcaacatctccttaatttcctcctctttttccctc |
41958891 |
T |
|
| Q |
315 |
gacccctattttct |
328 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41958890 |
gacccctattttct |
41958877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 40842367 - 40842107
Alignment:
| Q |
14 |
caaaaactgcatcagctaaagtcatagaagaataagtcaccgtaaattgaatttgaaaatcattaagcatgtaagttctcttctctcccctcaaatcata |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40842367 |
caaaaactgcatcagctagagtcatagaagaataagtcaccgtaaattgaatttgaaaagcattaagcatgtaagttctcctctctcccctcaaatcata |
40842268 |
T |
|
| Q |
114 |
taccacacgattgagaagttccaaggtacccaaattcatgtctcaaattataatacagaggccaattaatgttccttatcaattctctaccaagtcttcc |
213 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40842267 |
taccacacgattgagaagttctaagatacccaaatccatgtctcaaattatact--agaggccaattaatgttccttatcaattctctaccaagtcttcc |
40842170 |
T |
|
| Q |
214 |
tttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40842169 |
tttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
40842107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 321 - 599
Target Start/End: Complemental strand, 41958833 - 41958567
Alignment:
| Q |
321 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41958833 |
tattttctatgttcacgaaaattattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
41958734 |
T |
|
| Q |
421 |
acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41958733 |
acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcagcacactcaatttcgtgcaagcctaaagaaacatgaagtg |
41958634 |
T |
|
| Q |
521 |
tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccc |
599 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41958633 |
tttgatcgtg------------ctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccc |
41958567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 40842013 - 40841959
Alignment:
| Q |
274 |
ttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
328 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40842013 |
ttataatcaacatctccttaatttcctcctctttttccctcgacccctattttct |
40841959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 321 - 592
Target Start/End: Original strand, 29587313 - 29587584
Alignment:
| Q |
321 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
29587313 |
tattttctatgttcacgaaagttattttctgccgtgagcaaccactagaaatcatgccactccctcacattcataccaaccccttatgttgtaatagtaa |
29587412 |
T |
|
| Q |
421 |
acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29587413 |
acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcaacatactcaatttcgtgcaagcctaaagaaacatgaagtg |
29587512 |
T |
|
| Q |
521 |
tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggct |
592 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29587513 |
ttagttcgtgcgtttgaagattctctaaaagcactaagttgaaaggggagaaaagcgtctaaggtaagggct |
29587584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 29586964 - 29587269
Alignment:
| Q |
14 |
caaaaactgcatcagctaaagtcatagaagaataagtcaccgtaaattgaatttgaaaatcattaagcatgtaagttctcttctctcccctcaaatcata |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29586964 |
caaaaactgcatcagctagagtcatagaagaataagccgtcgtaaattgaattggaaaagcattaagcatgtaagttctcctctctcccctcaaatcata |
29587063 |
T |
|
| Q |
114 |
taccacacgattgagaagttccaaggtacccaaattcatgtctcaaattataatacagaggccaattaatgttccttatcaattctctaccaagtcttcc |
213 |
Q |
| |
|
|| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29587064 |
tatcacacgattgagaagtttcaagatacccaaattcatgtctcaaattatactacagaggccaattaatgttccttatcaattctcta-caagtcttcc |
29587162 |
T |
|
| Q |
214 |
tttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttttccct |
313 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
29587163 |
tttgttcaattacaattttga--------ttacaatattcaattacttgtctcattataattatgatcaacttctccttaatttcctcctctttttccct |
29587254 |
T |
|
| Q |
314 |
cgacccctattttct |
328 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29587255 |
cgacccctattttct |
29587269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 369 - 601
Target Start/End: Original strand, 9993078 - 9993310
Alignment:
| Q |
369 |
aaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaaacctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaac |
468 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
9993078 |
aaatcacgccactccctcacattcataacaaccccttgtgttctgatagtaaacctctttgttcgaagaatatttatcatcttggaaccataagcaaaac |
9993177 |
T |
|
| Q |
469 |
cacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtgtttgttcgtgcgtttggagattctctaaaagcactaagttgaaagggg |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9993178 |
cacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtgtttgttcgtgcatttggagattctctaaaagcactaagttgaaagggg |
9993277 |
T |
|
| Q |
569 |
agaaaagggtctaaggtaagggctttttcccca |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9993278 |
agaaaagggtctaaggtaagggctttttcccca |
9993310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 9992746 - 9993047
Alignment:
| Q |
23 |
catcagctaaagtcatagaagaataag----tcaccgtaaattgaatttgaaaatcattaagcatgtaagttctcttctctcccctcaaatcatatacca |
118 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
9992746 |
catcaactagagtcatagaagaataagtaagtcaccgtaaattgaatttgaaaagcattaagcatgtaagttctcctctctcctctcaaatcatatacca |
9992845 |
T |
|
| Q |
119 |
cacgattgagaagttccaaggtacccaaattcatgtctcaaattataatacagaggccaattaatgttccttatcaattctctaccaagtcttcctttgt |
218 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9992846 |
cacggttgagaagtttcaagatacccaaattcatgtcacaaactatactacagaggccaattaatgttccttatcaattctctaccaagtcttcctttgt |
9992945 |
T |
|
| Q |
219 |
tcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttttccctcgacc |
318 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9992946 |
tcaattacaattttga--------ttacagtattcaattacttgtctcattataattataatcaacatctccttaatttcctcctctttttccctcgacc |
9993037 |
T |
|
| Q |
319 |
cctattttct |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
9993038 |
cctattttct |
9993047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University