View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_high_99 (Length: 264)
Name: NF19927_high_99
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_high_99 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 1370892 - 1370661
Alignment:
| Q |
16 |
atgacaattttgttctggttatatgcttctactgttcattttttatgtattaaacatctaagtgggcttggtcaagccattatatttattcatcatgtat |
115 |
Q |
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| T |
1370892 |
atgacaattttgttctggttatatgcttctactattcattttttatgtattaaacatctaagtgggcttggtcaagccattatatttattcatcatgtat |
1370793 |
T |
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| Q |
116 |
gtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaattacaagttgatatgtatggaatttaattactgaa |
215 |
Q |
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| T |
1370792 |
gtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaattacaagttgctacgtagggaatttaattactgat |
1370693 |
T |
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| Q |
216 |
ttttgttgggacaactctcaagggttcacatt |
247 |
Q |
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| T |
1370692 |
tttggttggaataactctcaaggattcacatt |
1370661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 1365122 - 1364972
Alignment:
| Q |
98 |
tatttattcatcatgt--atgtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaattacaagttgatatg |
195 |
Q |
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| T |
1365122 |
tatttattgatcatgtctatgtttactcacactgctatgtctaatttccttg-acaggccatttattgaaatacacgtaaaagaattacaagttgctacg |
1365024 |
T |
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| Q |
196 |
tatggaatttaattactgaattttgttgggacaactctcaagggttcacatt |
247 |
Q |
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| T |
1365023 |
tagggaatttaattactgattttggttggaataactctcaaggattcacatt |
1364972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 1406365 - 1406452
Alignment:
| Q |
160 |
attgcaatacatgtaaaagaattacaagttgatatgtatggaatttaattactgaattttgttgggacaactctcaagggttcacatt |
247 |
Q |
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| T |
1406365 |
attgaaatacacgtaaaagaattacaagttgctacgtagggaatttaattactgattttggttggaataactctcaaggattcacatt |
1406452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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