View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_10 (Length: 610)
Name: NF19927_low_10
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_10 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 12114 - 11595
Alignment:
| Q |
17 |
atacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagtagtatttgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12114 |
atacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagtagtatttgca |
12015 |
T |
|
| Q |
117 |
tttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatacta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12014 |
tttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatacta |
11915 |
T |
|
| Q |
217 |
agatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11914 |
agatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactc |
11815 |
T |
|
| Q |
317 |
tcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
11814 |
tcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctc |
11715 |
T |
|
| Q |
417 |
aaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagacc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11714 |
aaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagacc |
11615 |
T |
|
| Q |
517 |
agattgtaattaaatagtgg |
536 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11614 |
agattgtaattaaatagtgg |
11595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 76 - 536
Target Start/End: Complemental strand, 4399 - 3939
Alignment:
| Q |
76 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
175 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4399 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
4300 |
T |
|
| Q |
176 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4299 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
4200 |
T |
|
| Q |
276 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4199 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
4100 |
T |
|
| Q |
376 |
ccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4099 |
ccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacc |
4000 |
T |
|
| Q |
476 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3999 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 4489 - 4452
Alignment:
| Q |
17 |
atacagaatatctctcaagctttgtaagtcatactttt |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4489 |
atacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 6510434 - 6509915
Alignment:
| Q |
17 |
atacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagtagtatttgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510434 |
atacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagtagtatttgca |
6510335 |
T |
|
| Q |
117 |
tttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatacta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || | |||||||||||||||||||||||||| | |
|
|
| T |
6510334 |
tttgggtaaatttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattctactttaaacaatgattcacgaaatgaaattttt |
6510235 |
T |
|
| Q |
217 |
agatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactc |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510234 |
agatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactc |
6510135 |
T |
|
| Q |
317 |
tcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
6510134 |
tcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctc |
6510035 |
T |
|
| Q |
417 |
aaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagacc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510034 |
aaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagacc |
6509935 |
T |
|
| Q |
517 |
agattgtaattaaatagtgg |
536 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6509934 |
agattgtaattaaatagtgg |
6509915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 109 - 351
Target Start/End: Complemental strand, 6497356 - 6497114
Alignment:
| Q |
109 |
tatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatg |
208 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| | | |||||||||||||||||||||| |
|
|
| T |
6497356 |
tatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgcaacaagtatcatagatcccacgttaaacaatgattcacgaaatg |
6497257 |
T |
|
| Q |
209 |
aaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattc |
308 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
6497256 |
aaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgtagtagtgatgctaaatagtgattc |
6497157 |
T |
|
| Q |
309 |
tgttactctcccaatgcctttggaacctgcatttcatatggat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497156 |
agttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 76 - 329
Target Start/End: Complemental strand, 6502721 - 6502468
Alignment:
| Q |
76 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
175 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6502721 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
6502622 |
T |
|
| Q |
176 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |
|
|
| T |
6502621 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccat |
6502522 |
T |
|
| Q |
276 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
329 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
6502521 |
ggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 125 - 347
Target Start/End: Complemental strand, 6514690 - 6514468
Alignment:
| Q |
125 |
aatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtat |
224 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||| |||||| ||| | |||||||| |
|
|
| T |
6514690 |
aatttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtat |
6514591 |
T |
|
| Q |
225 |
ccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6514590 |
ccatattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaatt |
6514491 |
T |
|
| Q |
325 |
cctttggaacctgcatttcatat |
347 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
6514490 |
cctttgcaacctgcatttcatat |
6514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 6525879 - 6526011
Alignment:
| Q |
186 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
285 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| || |
|
|
| T |
6525879 |
attaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctatt |
6525978 |
T |
|
| Q |
286 |
gtagtgatgcttaatagtgattctgttactctc |
318 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |
|
|
| T |
6525979 |
gtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 47771525 - 47771667
Alignment:
| Q |
186 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
285 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47771525 |
attaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgtt |
47771624 |
T |
|
| Q |
286 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
328 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47771625 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47771667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 47775677 - 47775819
Alignment:
| Q |
186 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
285 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47775677 |
attaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgtt |
47775776 |
T |
|
| Q |
286 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
328 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47775777 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47775819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 6502810 - 6502773
Alignment:
| Q |
17 |
atacagaatatctctcaagctttgtaagtcatactttt |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6502810 |
atacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
268 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
338 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
|
|
| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
198 |
ttcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctag |
263 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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