View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_100 (Length: 283)

Name: NF19927_low_100
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_100
NF19927_low_100
[»] chr8 (3 HSPs)
chr8 (89-275)||(2159293-2159479)
chr8 (19-96)||(2159515-2159592)
chr8 (39-95)||(2162058-2162114)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 2159479 - 2159293
Alignment:
Q  89 atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtgatctctagtgaagatatagtattcaaaaggaattaagaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2159479 atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtcatctctagtgaagatatagtattcaaaaggaattaagaa 2159380  T
Q  189 accatagcagttatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctc 275  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2159379 accatagcaattatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctc 2159293  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 2159592 - 2159515
Alignment:
Q  19 aaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2159592 aaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt 2159515  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 2162114 - 2162058
Alignment:
Q  39 aacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt 95  Q
    ||||||||||||||||| |||||||||||||||||   | |||||||||||||||||    
T  2162114 aacagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcattt 2162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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