View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_106 (Length: 267)
Name: NF19927_low_106
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_106 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 108246 - 108430
Alignment:
| Q |
1 |
ctttgggatgggtgtatgtgaaagatgttgcaaatgcccatattctggcatacgaaaatgctccagctagtggaagacattgtttggttgagagtgtagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108246 |
ctttgggatgggtgtatgtgaaagatgttgcaaatgcccatattctggcgtacgagaatgcttcagctagtggaagacattgtttggttgagagtgtagc |
108345 |
T |
|
| Q |
101 |
gcactactcagaaattgtgaagattttacgtgaactgtacccttcattgcaactcccagagaagtaagattaataatttcgataa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108346 |
gcactactcagaaattgtgaagattttacgtgaactgtacccttcgttgcaactcccagagaagtaagattaataatttcgataa |
108430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 89145 - 89343
Alignment:
| Q |
6 |
ggatgggtgtatgtgaaagatgttgcaaatgcccatattctggcatacgaaaatgctccagctagtggaagacattgtttggttgagagtgtagcgcact |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
89145 |
ggatgggtcaatgtgaaagatgttgcaaatgcccatattctggcgtacgagaatgcttcagcgagtggaagacattgtttagttgagagagtagcacact |
89244 |
T |
|
| Q |
106 |
actcagaaattgtgaagattttacgtgaactgtacccttcattgcaactcccagagaagtaagattaataatttcgataactgaaagattgcatataat |
204 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
89245 |
actccgaagttgtgaggattttacgtgaactgtacccttcgttgcaactcccagagaagtaagattaataatttcgataactgaatgatagcatataat |
89343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 2708105 - 2708287
Alignment:
| Q |
7 |
gatgggtgtatgtgaaagatgttgcaaatgcccatattctggcatacgaaaatgctccagctagtggaagacattgtttggttgagagtgtagcgcacta |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| | || |||||||||||| ||| ||||| |
|
|
| T |
2708105 |
gatgggtcaatgtgaaagatgttgcaaatgcccatattctggcgtacgagaatgcttc---------------ttctttggttgagagactagtccacta |
2708189 |
T |
|
| Q |
107 |
ctcagaaattgtgaagattttacgtgaactgtacccttcattgcaactcccagagaagtaagattaataatttcgataactgaaagattgcatataat |
204 |
Q |
| |
|
||||||| | ||||||||||||||| | | || |||| | |||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2708190 |
ctcagaactggtgaagattttacgtaaccagtgccctacgttgcaactcccagaaaaggaagattaataatttcagcaacttaaagattgcatataat |
2708287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 108667 - 108712
Alignment:
| Q |
206 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108667 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaa |
108712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 25935845 - 25935971
Alignment:
| Q |
16 |
atgtgaaagatgttgcaaatgcccatattctggcatacgaaaatgctccagctagtggaagacattgtttggttgagagtgtagcgcactactcagaaat |
115 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || | |||| |||||||||||||| ||||||||| |||||| || | ||||| |||||| | |
|
|
| T |
25935845 |
atgtgaaagatgttgctaacgcccatattctggcatatgagactgcttcagctagtggaagatattgtttggctgagagagtggtacactattcagaact |
25935944 |
T |
|
| Q |
116 |
tgtgaagattttacgtgaactgtaccc |
142 |
Q |
| |
|
|| | |||||||||||| |||||||| |
|
|
| T |
25935945 |
tgctatgattttacgtgatctgtaccc |
25935971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 29549900 - 29549972
Alignment:
| Q |
16 |
atgtgaaagatgttgcaaatgcccatattctggcatacgaaaatgctccagctagtggaagacattgtttggt |
88 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| ||||| || |||||| |||||||||||||| |||||||||| |
|
|
| T |
29549900 |
atgtgaaggatattgcaaatgcacatattcaagcatatgagaatgcttcagctagtggaagatattgtttggt |
29549972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University