View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_110 (Length: 259)
Name: NF19927_low_110
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 51383515 - 51383744
Alignment:
| Q |
18 |
ataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgt |
117 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383515 |
ataagaagtattgagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgt |
51383614 |
T |
|
| Q |
118 |
tgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcc |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383615 |
tgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcc |
51383714 |
T |
|
| Q |
218 |
aggacctatagacacttggaatgagatttt |
247 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
51383715 |
aggacctatagacacttggaatgagatttt |
51383744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 15284330 - 15284559
Alignment:
| Q |
18 |
ataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgt |
117 |
Q |
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||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
15284330 |
ataagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgt |
15284429 |
T |
|
| Q |
118 |
tgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcc |
217 |
Q |
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||||||||||||||||||| || || || |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
15284430 |
tgagaccagatggtcatgctggtgcttatatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgcc |
15284529 |
T |
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| Q |
218 |
aggacctatagacacttggaatgagatttt |
247 |
Q |
| |
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|||||||||||| ||||||||||||||||| |
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| T |
15284530 |
aggacctatagatacttggaatgagatttt |
15284559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 15287516 - 15287356
Alignment:
| Q |
87 |
gaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatg |
186 |
Q |
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|||||| | ||| |||| ||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
15287516 |
gaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatg |
15287417 |
T |
|
| Q |
187 |
tacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgagatttt |
247 |
Q |
| |
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| T |
15287416 |
tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagatttt |
15287356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 15262929 - 15263070
Alignment:
| Q |
106 |
aattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||||||||||||||| || || || || ||||||||||||| ||||||||||||||||| |
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| T |
15262929 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttca |
15263028 |
T |
|
| Q |
206 |
ttggtgtttgccaggacctatagacacttggaatgagatttt |
247 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
15263029 |
ttggtgtttgcctggacctatagatacttggaatgagatttt |
15263070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 15256839 - 15256685
Alignment:
| Q |
93 |
cttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaa |
192 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |||| | || ||| | |||||||||||||| ||||| ||||| | ||| || | |
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|
| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtgttccagaacgtgtgcaga |
15256740 |
T |
|
| Q |
193 |
atgattgtgttcattggtgtttgccaggacctatagacacttggaatgagatttt |
247 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
15256739 |
atgattgtgttcattggtgtttgcctggacctatagacacatggaatgagatttt |
15256685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 15265357 - 15265213
Alignment:
| Q |
100 |
taacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattg |
199 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||| | || ||||||||||||||||| |||||| ||| | | |||| ||||||||||| |
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|
| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg |
15265258 |
T |
|
| Q |
200 |
tgttcattggtgtttgccaggacctatagacacttggaatgagat |
244 |
Q |
| |
|
|||||||||||||||||| ||||| || || || ||||||||||| |
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| T |
15265257 |
tgttcattggtgtttgcctggaccaattgatacatggaatgagat |
15265213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 44248230 - 44248001
Alignment:
| Q |
18 |
ataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgt |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| | |
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|
| T |
44248230 |
ataagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattat |
44248131 |
T |
|
| Q |
118 |
tgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcc |
217 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
44248130 |
tgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgcc |
44248031 |
T |
|
| Q |
218 |
aggacctatagacacttggaatgagatttt |
247 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |
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|
| T |
44248030 |
aggacctatagatatttggaatgagatttt |
44248001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 11807148 - 11806919
Alignment:
| Q |
18 |
ataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgt |
117 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |||| || ||||| | ||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
11807148 |
ataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgt |
11807049 |
T |
|
| Q |
118 |
tgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcc |
217 |
Q |
| |
|
||||||||||||||||||||||||| || | | ||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| ||||| |
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|
| T |
11807048 |
tgagaccagatggtcatgcaggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgcc |
11806949 |
T |
|
| Q |
218 |
aggacctatagacacttggaatgagatttt |
247 |
Q |
| |
|
||||||||| || ||||||||||||||||| |
|
|
| T |
11806948 |
aggacctattgatacttggaatgagatttt |
11806919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 6554224 - 6554187
Alignment:
| Q |
192 |
aatgattgtgttcattggtgtttgccaggacctataga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6554224 |
aatgattgtgttcattggtgtttgccagggcctataga |
6554187 |
T |
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